{
"@context": "/terms/",
"@id": "/primary-cells/IGVFSM0354RWOF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0354RWOF",
"age": "unknown",
"aliases": [
"buenrostro-bernstein:surya-DSS05-DSS-m1 1_to_16, DSS05-DSS-m2 17_to_48, DSS05-Control-m3 49_to_80, DSS05-Control-m4 81_to_96"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Primary cell [IGVFSM0354RWOF](/primary-cells/IGVFSM0354RWOF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/primary-cells/IGVFSM0354RWOF/"
}
],
"WARNING": [
{
"category": "missing age",
"detail": "Primary cell [IGVFSM0354RWOF](/primary-cells/IGVFSM0354RWOF/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM0354RWOF/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"classifications": [
"primary cell"
],
"creation_timestamp": "2025-02-07T01:55:57.890281+00:00",
"donors": [
{
"@id": "/rodent-donors/IGVFDO9526OTLM/",
"accession": "IGVFDO9526OTLM",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4865EMFK/",
"accession": "IGVFDO4865EMFK",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO0997UHAO/",
"accession": "IGVFDO0997UHAO",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO4795UJTB/",
"accession": "IGVFDO4795UJTB",
"status": "released",
"strain": "C57BL/6J"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6690HJKJ/",
"accession": "IGVFDS6690HJKJ",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set17"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9364TNAM/",
"accession": "IGVFDS9364TNAM",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set6"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8684IGUT/",
"accession": "IGVFDS8684IGUT",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set16"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6729QWDJ/",
"accession": "IGVFDS6729QWDJ",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set18"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell RNA sequencing assay (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3861CXLU/",
"accession": "IGVFDS3861CXLU",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set5"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6298OKGJ/",
"accession": "IGVFDS6298OKGJ",
"aliases": [
"buenrostro-bernstein:surya-mouse-colon_mm-set4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"preferred_assay_title": "SHARE-seq",
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0237MRDL/",
"accession": "IGVFDS0237MRDL",
"aliases": [
"buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jason Buenrostro, Broad"
},
"status": "released",
"summary": "SHARE-seq: fragments, sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiplexed_in": [],
"origin_of": [],
"parts": [],
"pooled_in": [],
"release_timestamp": "2025-03-26T17:34:04.805478+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001155/",
"status": "released",
"term_name": "colon"
}
],
"schema_version": "22",
"sex": "unspecified",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"summary": "Mus musculus C57BL/6J colon cell",
"taxa": "Mus musculus",
"uuid": "d10b1022-08d1-4bca-84ad-c526ea7786a3",
"virtual": false
}