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Assay

Preferred Assay Title

Control Type

Auxiliary Data

Construct Library Data

Readout Genes

Investigated Gene

Sequencing Platform

698 items
IGVFDS6647HVMC
  • jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
feb7d08a-1287-4cac-b362-f81fd5ba1f81
IGVFDS4363PDBQ
  • jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe739718-a398-4e5c-b7b5-4d95497c90ad
IGVFDS2419JZMR
  • jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4
TLNRD1
experimental data
CRISPR FlowFISH screen
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
Homo sapiens
fe738818-a459-4367-8223-af72aa6bca96
IGVFDS4736IKQS
  • jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing
experimental data
Variant-EFFECTS
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe6d143f-dbd2-40a5-b72b-55021f81951f
IGVFDS3969UCCQ
  • charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-rep3
experimental data
RNA-seq
released
CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3
Homo sapiens
fe29fcd6-36dd-4bba-acde-cc30fbb5ebc7
IGVFDS5041NPBP
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144
KITLG
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fe1a8271-fd7e-454e-ae2c-187f1d46d77d
IGVFDS5601DSMT
  • jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd6e5d84-173b-4f03-8de0-67bbec8d433f
IGVFDS2160ZTSJ
  • charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-batf3-over-high-bin-rep1
IL7R
experimental data
CRISPR FACS screen
released
CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
Homo sapiens
fd5cf966-33dd-44fe-a22a-8bde46de6152
IGVFDS8710ZSOZ
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165
KITLG
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c
IGVFDS7147ANAC
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
  • jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116
KITLG
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fc9ab042-6677-4c24-9a08-261355a7f363
IGVFDS9961QTUB
  • charles-gersbach:measurement-set-bulk-atac-chir4um-ipsc-cm-rep2
experimental data
ATAC-seq
released
ATAC-seq
Homo sapiens
fc218399-8c88-4d99-88f7-dbbce4050170
IGVFDS0885VFHW
  • jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
experimental data
MPRA
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fb95a9da-2dd1-4f85-b7b7-4604eea3838f
IGVFDS3899ANMJ
  • jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb676008-1191-4fbf-b590-6e868e8a197f
IGVFDS5128CXIS
  • jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
experimental data
Variant-EFFECTS
released
untransfected prime editing Variant-EFFECTS
Homo sapiens
fb47792f-c0be-488b-84bd-c23a65c154a1
IGVFDS9738RCWL
  • jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb30f5f3-a7fc-435a-8ec3-890a56d9703f
IGVFDS1619VKNB
  • charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-rep1
experimental data
ATAC-seq
released
ATAC-seq integrating an expression vector library of BATF3
Homo sapiens
fac6ae1a-55ce-44cc-879c-2b167fb2ff8d
IGVFDS9880SAMJ
  • jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fa80915b-6ed1-4719-95bc-30b16118a77f
IGVFDS1261RWQY
  • jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR1-Rep1_S29
  • jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR2-Rep1_S35
  • jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR3-Rep1_S83
  • jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR4-Rep1_S89
ITPRID2
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f94bbd36-f814-4589-b13f-86cab3019eec
IGVFDS1564ZVKC
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep1_S140
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep2_S195
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep1_S146
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep2_S201
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep1_S152
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep2_S207
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep1_S158
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep2_S213
MYC
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f9389ff1-8452-43ea-a522-a576ab5fbe9e
IGVFDS5795QOPU
  • jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f8867dee-4d9c-4714-b3a2-53ab6e170b93
IGVFDS9690GCYG
  • jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binD_PCR1_S132
NOS3
experimental data
CRISPR FlowFISH screen
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f81db119-fd66-4221-9a50-eb2d4f1e86b4
IGVFDS6884MESW
  • jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f7f1f2fc-675d-4e2b-818c-b1716303967b
IGVFDS6275PORW
  • jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binC_PCR1_S131
NOS3
experimental data
CRISPR FlowFISH screen
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f7bcd880-6bee-4c66-a56a-92ae8018f796
IGVFDS1298BFAZ
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep1_S1
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep2_S56
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep1_S7
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep2_S62
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep1_S13
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep2_S68
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep1_S19
  • jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep2_S74
MYC
experimental data
CRISPR FlowFISH screen
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f64a8b0f-1c14-4e13-92af-a915aa8c8f7d
IGVFDS3292ERTL
  • jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing
PPIF
experimental data
Variant-EFFECTS
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f637cecf-f002-49cd-bdac-8a03a123ffac