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MeasurementSet
Measurement Set Details
Sample
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Quality
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Assay
All
None
in vitro CRISPR screen using flow cytometry
585
massively parallel reporter assay
44
bulk RNA-seq assay
21
in vitro CRISPR screen using single-cell RNA-seq
18
bulk assay for transposase-accessible chromatin using sequencing
16
single-nucleus RNA sequencing assay
10
single-cell ATAC-seq
4
Preferred Assay Title
All
None
Variant-EFFECTS
341
CRISPR FlowFISH screen
204
CRISPR FACS screen
40
MPRA
38
RNA-seq
21
ATAC-seq
16
Parse SPLiT-seq
10
scCRISPR screen
8
MPRA (scQer)
6
Perturb-seq
6
TAP-seq
4
scATAC-seq
4
Control Type
All
None
unsorted FACS input
57
untransfected
6
Auxiliary Data
All
None
variant sequencing
340
gRNA sequencing
262
cell sorting
156
quantification DNA barcode sequencing
44
circularized RNA barcode detection
6
Construct Library Data
All
None
guide library
606
reporter library
44
expression vector library
16
Readout Genes
All
None
PPIF
278
KITLG
48
CCND1
36
NOS3
32
FAM3C
24
ITPRID2
24
MYC
24
TLNRD1
16
IL2RA
12
CCR7
10
IL7R
8
B2M
6
CD2
4
Investigated Gene
All
None
Clear term filter
NOS3
32
BATF3
14
IL2RA
12
B2M
6
BACH2
6
BATF
6
BHLHE40
6
CREM
6
DNMT1
6
EOMES
6
See all 30 terms
Sequencing Platform
All
None
Illumina NextSeq 550
347
Illumina NextSeq 2000
42
Illumina NovaSeq 6000
33
Illumina NextSeq 500
32
ONT GridION X5
1
ONT PromethION 2 Solo
1
Status
released
Download TSV
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ID
Accession
Aliases
Alternate Accessions
Assay Targeted Genes
Assay Term
Award
Donors
File Set Type
Functional Assay Mechanisms
Lab
Preferred Assay Title
Protocols
Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/measurement-sets/IGVFDS6647HVMC/
IGVFDS6647HVMC
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8601WYGY/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
feb7d08a-1287-4cac-b362-f81fd5ba1f81
/measurement-sets/IGVFDS4363PDBQ/
IGVFDS4363PDBQ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7022AZSZ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe739718-a398-4e5c-b7b5-4d95497c90ad
/measurement-sets/IGVFDS2419JZMR/
IGVFDS2419JZMR
jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4
TLNRD1
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5826EWDE/
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
Homo sapiens
fe738818-a459-4367-8223-af72aa6bca96
/measurement-sets/IGVFDS4736IKQS/
IGVFDS4736IKQS
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0906STHP/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe6d143f-dbd2-40a5-b72b-55021f81951f
/measurement-sets/IGVFDS3969UCCQ/
IGVFDS3969UCCQ
charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-rep3
/assay-terms/OBI_0003090/
/awards/HG012053/
/human-donors/IGVFDO4048LCOU/
experimental data
/labs/charles-gersbach/
RNA-seq
https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1
,
https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6
/primary-cells/IGVFSM7117ATUZ/
released
CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3
Homo sapiens
fe29fcd6-36dd-4bba-acde-cc30fbb5ebc7
/measurement-sets/IGVFDS5041NPBP/
IGVFDS5041NPBP
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM1131LTFK/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fe1a8271-fd7e-454e-ae2c-187f1d46d77d
/measurement-sets/IGVFDS5601DSMT/
IGVFDS5601DSMT
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1683OFWB/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd6e5d84-173b-4f03-8de0-67bbec8d433f
/measurement-sets/IGVFDS2160ZTSJ/
IGVFDS2160ZTSJ
charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-batf3-over-high-bin-rep1
IL7R
/assay-terms/OBI_0003661/
/awards/HG012053/
/human-donors/IGVFDO8306NDTY/
experimental data
/labs/charles-gersbach/
CRISPR FACS screen
https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1
/primary-cells/IGVFSM8084QKPW/
released
CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
Homo sapiens
fd5cf966-33dd-44fe-a22a-8bde46de6152
/measurement-sets/IGVFDS8710ZSOZ/
IGVFDS8710ZSOZ
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM7299CMAO/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c
/measurement-sets/IGVFDS7147ANAC/
IGVFDS7147ANAC
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3263KXLP/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fc9ab042-6677-4c24-9a08-261355a7f363
/measurement-sets/IGVFDS9961QTUB/
IGVFDS9961QTUB
charles-gersbach:measurement-set-bulk-atac-chir4um-ipsc-cm-rep2
/assay-terms/OBI_0003089/
/awards/HG012053/
/human-donors/IGVFDO3212TBUN/
experimental data
/labs/charles-gersbach/
ATAC-seq
https://www.protocols.io/view/atac-seq-for-human-ipsc-cm-following-gsk3-inhibiti-5qpvokj27l4o
/in-vitro-systems/IGVFSM9172PRNN/
released
ATAC-seq
Homo sapiens
fc218399-8c88-4d99-88f7-dbbce4050170
/measurement-sets/IGVFDS0885VFHW/
IGVFDS0885VFHW
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3546ITTD/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fb95a9da-2dd1-4f85-b7b7-4604eea3838f
/measurement-sets/IGVFDS3899ANMJ/
IGVFDS3899ANMJ
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1757XEWZ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb676008-1191-4fbf-b590-6e868e8a197f
/measurement-sets/IGVFDS5128CXIS/
IGVFDS5128CXIS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3211UEWZ/
released
untransfected prime editing Variant-EFFECTS
Homo sapiens
fb47792f-c0be-488b-84bd-c23a65c154a1
/measurement-sets/IGVFDS9738RCWL/
IGVFDS9738RCWL
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8638GWPD/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb30f5f3-a7fc-435a-8ec3-890a56d9703f
/measurement-sets/IGVFDS1619VKNB/
IGVFDS1619VKNB
charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-rep1
/assay-terms/OBI_0003089/
/awards/HG012053/
/human-donors/IGVFDO9588OERW/
experimental data
/labs/charles-gersbach/
ATAC-seq
https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn
/primary-cells/IGVFSM0066TACG/
released
ATAC-seq integrating an expression vector library of BATF3
Homo sapiens
fac6ae1a-55ce-44cc-879c-2b167fb2ff8d
/measurement-sets/IGVFDS9880SAMJ/
IGVFDS9880SAMJ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0425HXKG/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fa80915b-6ed1-4719-95bc-30b16118a77f
/measurement-sets/IGVFDS1261RWQY/
IGVFDS1261RWQY
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR1-Rep1_S29
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR2-Rep1_S35
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR3-Rep1_S83
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR4-Rep1_S89
ITPRID2
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM9082URPW/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f94bbd36-f814-4589-b13f-86cab3019eec
/measurement-sets/IGVFDS1564ZVKC/
IGVFDS1564ZVKC
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep1_S140
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep2_S195
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep1_S146
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep2_S201
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep1_S152
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep2_S207
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep1_S158
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep2_S213
MYC
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3012RMVA/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f9389ff1-8452-43ea-a522-a576ab5fbe9e
/measurement-sets/IGVFDS5795QOPU/
IGVFDS5795QOPU
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1676ETUI/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f8867dee-4d9c-4714-b3a2-53ab6e170b93
/measurement-sets/IGVFDS9690GCYG/
IGVFDS9690GCYG
jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binD_PCR1_S132
NOS3
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0634QOST/
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f81db119-fd66-4221-9a50-eb2d4f1e86b4
/measurement-sets/IGVFDS6884MESW/
IGVFDS6884MESW
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7935BTPN/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f7f1f2fc-675d-4e2b-818c-b1716303967b
/measurement-sets/IGVFDS6275PORW/
IGVFDS6275PORW
jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binC_PCR1_S131
NOS3
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3812UYWH/
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f7bcd880-6bee-4c66-a56a-92ae8018f796
/measurement-sets/IGVFDS1298BFAZ/
IGVFDS1298BFAZ
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep1_S1
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep2_S56
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep1_S7
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep2_S62
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep1_S13
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep2_S68
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep1_S19
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep2_S74
MYC
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3086DQMC/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f64a8b0f-1c14-4e13-92af-a915aa8c8f7d
/measurement-sets/IGVFDS3292ERTL/
IGVFDS3292ERTL
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8589BNCG/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
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