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2 items
IGVFDS3627LKSF
  • andrew-allen:bluestarr-k562-model
  • bill-majoros:bluestarr-k562-model
BlueSTARR is a neural network trained on STARR-seq data that takes genomic sequence as input and predicts STARR-seq activity as output. This version of BlueSTARR was trained on a STARR-seq experiment done in K562 cells, and takes a 300 bp sequence as input. Variant predictions are made by running the model twice (once for the reference allele and once for the alternate allele) and computing the predicted log2 fold change in STARR-seq activity for the change from reference to alternate.
neural network
BlueSTARR-K562
regulatory elements
released
BlueSTARR-K562 v0.1.0 neural network predicting regulatory elements
1f877b14-5f82-445c-9727-9133828009a1
IGVFDS4146YLZU
  • igvf:cCREs
GRCh38
cCREs
elements
released
Homo sapiens GRCh38 elements
Homo sapiens
057ff349-a0f1-4e56-84b0-a9fd550cadca