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deseq2
5
samtools
3
anndata
1
bamtools
1
bowtie
1
bowtie2
1
bustools
1
bwa
1
cellranger
1
cooler
1
See all 23 terms
Analysis Step Types
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quantification
6
alignment
3
filtering
3
signal generation
3
counts normalization
1
interaction calling
1
merging
1
peak calling
1
Output Types
All
None
fold change over control
3
alignments
2
bin paired count
1
contact matrix
1
differential chromatin contact quantifications
1
differential gene expression quantifications
1
filtered feature barcode matrix
1
guide quantifications
1
peak quantifications
1
raw feature barcode matrix
1
sparse gene count matrix
1
transcript quantifications
1
transcriptome alignments
1
Status
released
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8 items
ID
Accession
Aliases
Alternate Accessions
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Lab
Name
Status
Summary
UUID
/workflows/IGVFWF7562QXLM/
IGVFWF7562QXLM
/awards/Community/
/labs/community/
Cell Ranger Gene Count Pipeline
released
IGVFWF7562QXLM
e5edde03-e935-4d24-b8fd-74b132b1e7c2
/workflows/IGVFWF2849QJOS/
IGVFWF2849QJOS
/awards/HG012053/
/labs/charles-gersbach/
Gersbach HiCAR Quantification Workflow
released
IGVFWF2849QJOS
c035befe-b503-4942-96a0-3cb5b09afaff
/workflows/IGVFWF6241JYDF/
IGVFWF6241JYDF
ali-mortazavi:uci-parse-split-seq-workflow
/awards/HG012077/
/labs/ali-mortazavi/
UCI snRNA-seq workflow
released
IGVFWF6241JYDF
98c80874-8fec-4e74-b4ef-f37d62848046
/workflows/IGVFWF5701UESO/
IGVFWF5701UESO
/awards/HG012053/
/labs/charles-gersbach/
Gersbach Perturb-seq workflow
released
IGVFWF5701UESO
775f87d9-ec95-4fb8-8c02-9cb6f9b3780f
/workflows/IGVFWF6411VZLF/
IGVFWF6411VZLF
/awards/HG012053/
/labs/charles-gersbach/
Gersbach GGR ATAC-seq Pipeline
released
IGVFWF6411VZLF
6aba06bb-200f-42b8-b737-a8cce2753872
/workflows/IGVFWF1709OHTV/
IGVFWF1709OHTV
/awards/Community/
/labs/community/
nf-core HiCAR Pipeline
released
IGVFWF1709OHTV
50b3e2dd-e766-4cae-a0e4-a5740e1da9be
/workflows/IGVFWF8837BHJV/
IGVFWF8837BHJV
/awards/HG012053/
/labs/charles-gersbach/
Gersbach FACS CRISPR screen workflow
released
IGVFWF8837BHJV
45293495-252c-47b2-8106-065c39a27c4a
/workflows/IGVFWF6270QWBB/
IGVFWF6270QWBB
/awards/HG012053/
/labs/charles-gersbach/
Gersbach GGR RNA-seq Pipeline
released
IGVFWF6270QWBB
0ce42859-f491-4fe4-9274-53025b7a9608