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Title
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/analysis-step-versions/fbd5e8fb-4206-4b43-92d6-922cdfe1338b/
/analysis-steps/IGVFWF7562QXLM-count-matrix-filtering-step/
/awards/Community/
/labs/community/
/software-versions/cellranger-v6.0.1/
released
fbd5e8fb-4206-4b43-92d6-922cdfe1338b
fbd5e8fb-4206-4b43-92d6-922cdfe1338b
/analysis-step-versions/f9f6ae88-d515-4e49-9902-deea3cf87703/
/analysis-steps/IGVFWF8837BHJV-gersbach-facs-crispr-screen-alignment-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/bowtie2-v2.3.5/
released
f9f6ae88-d515-4e49-9902-deea3cf87703
f9f6ae88-d515-4e49-9902-deea3cf87703
/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/
/analysis-steps/IGVFWF6270QWBB-gersbach-ggr-rna-seq-pipeline-quantification-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/bamtools-v2.2.3/
released
f53cadd0-3e88-4b35-ab64-8e1683998686
f53cadd0-3e88-4b35-ab64-8e1683998686
/analysis-step-versions/f50466f8-1ed0-4abc-8604-f6668678139f/
luca-pinello:crispr-bean-mapped-counts-generation-step
/analysis-steps/IGVFWF8641DTYD-crispr-bean-mapped-counts-generation-step/
/awards/HG012010/
/labs/luca-pinello/
/software-versions/crispr-bean-v1.2.8/
released
f50466f8-1ed0-4abc-8604-f6668678139f
f50466f8-1ed0-4abc-8604-f6668678139f
/analysis-step-versions/f177d6b8-48b1-4d58-af7c-5c50da2b0e25/
/analysis-steps/IGVFWF3101OPAH-bluestarr-training-prediction-step/
/awards/HG011967/
/labs/andrew-allen/
/software-versions/bluestarr-v0.1.1/
released
f177d6b8-48b1-4d58-af7c-5c50da2b0e25
f177d6b8-48b1-4d58-af7c-5c50da2b0e25
/analysis-step-versions/ea59af97-e192-40b0-9699-909a8b3baa56/
/analysis-steps/IGVFWF1390CSVD-mpranalyze-variant-annotation-step/
/awards/HG011966/
/labs/nadav-ahituv/
/software-versions/mpranalyze-v1.24.0/
released
ea59af97-e192-40b0-9699-909a8b3baa56
ea59af97-e192-40b0-9699-909a8b3baa56
/analysis-step-versions/e27a16d2-c700-405f-92c4-89efe1a558ce/
jason-buenrostro:share-seq-alignment-v2-fragment-genration-step-version
/analysis-steps/IGVFWF0507XZOR-share-seq-alignment-v2-fragment-genration-step/
/awards/HG011986/
/labs/jason-buenrostro/
/software-versions/fastq-process-v0.9.0/
,
/software-versions/gnu-parallel-v20161222.0.0/
,
/software-versions/samtools-v1.21.0/
,
/software-versions/bowtie2-v2.5.4/
,
/software-versions/bedtools-v2.26.0/
,
/software-versions/tabix-v1.10.2/
released
e27a16d2-c700-405f-92c4-89efe1a558ce
e27a16d2-c700-405f-92c4-89efe1a558ce
/analysis-step-versions/dca2aa98-db85-449c-93f3-3f409a12f051/
luca-pinello:crispr-bean-modeling-step
/analysis-steps/IGVFWF8641DTYD-crispr-bean-modeling-step/
/awards/HG012010/
/labs/luca-pinello/
/software-versions/crispr-bean-v1.2.8/
released
dca2aa98-db85-449c-93f3-3f409a12f051
dca2aa98-db85-449c-93f3-3f409a12f051
/analysis-step-versions/c95d766a-a900-4694-8065-e12651f618ba/
/analysis-steps/IGVFWF6411VZLF-gersbach-ggr-atac-seq-pipeline-alignment-step/
/awards/Community/
/labs/community/
/software-versions/bowtie-v1.2.3/
,
/software-versions/samtools-v1.3.0/
released
c95d766a-a900-4694-8065-e12651f618ba
c95d766a-a900-4694-8065-e12651f618ba
/analysis-step-versions/c3d281e0-f647-4d3c-8ed5-710329d183f2/
/analysis-steps/IGVFWF1905PJEA-scrispra-differential-analysis-step/
/awards/HG011966/
/labs/jay-shendure/
/software-versions/sceptre-v0.9.2/
released
c3d281e0-f647-4d3c-8ed5-710329d183f2
c3d281e0-f647-4d3c-8ed5-710329d183f2
/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/
/analysis-steps/IGVFWF6032PEGT-mprasnakeflow-quantification-step/
/awards/HG011966/
/labs/martin-kircher/
/software-versions/mprasnakeflow-quantification-v0.3.0/
released
c3ad4525-87d0-4d22-9410-f3e616d7cb9c
c3ad4525-87d0-4d22-9410-f3e616d7cb9c
/analysis-step-versions/c0fbe877-fa6c-423b-8d56-e600bf8e2859/
daniel-bauer:mageck-mapped-counts-generation-step
/analysis-steps/IGVFWF7224ABWD-mageck-mapped-counts-generation-step/
/awards/HG012010/
/labs/daniel-bauer/
/software-versions/mageck-v0.5.9.5/
released
c0fbe877-fa6c-423b-8d56-e600bf8e2859
c0fbe877-fa6c-423b-8d56-e600bf8e2859
/analysis-step-versions/b4bb30ef-db5c-4314-bc56-a9f536851ec2/
/analysis-steps/IGVFWF1905PJEA-scrispra-differential-analysis-step/
/awards/HG011966/
/labs/jay-shendure/
/software-versions/shendure-sccrispra-custom-seurat-scripts-v1.0.0/
released
b4bb30ef-db5c-4314-bc56-a9f536851ec2
b4bb30ef-db5c-4314-bc56-a9f536851ec2
/analysis-step-versions/a958f5b0-0c40-46ec-82e9-db6b2b849244/
/analysis-steps/IGVFWF7562QXLM-count-matrix-generation-step/
/awards/Community/
/labs/community/
/software-versions/cellranger-v6.0.1/
released
a958f5b0-0c40-46ec-82e9-db6b2b849244
a958f5b0-0c40-46ec-82e9-db6b2b849244
/analysis-step-versions/a6d3968e-0580-4ec7-90a2-541324156967/
/analysis-steps/IGVFWF6270QWBB-gersbach-ggr-rna-seq-pipeline-signal-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/deseq2-v1.36.0/
released
a6d3968e-0580-4ec7-90a2-541324156967
a6d3968e-0580-4ec7-90a2-541324156967
/analysis-step-versions/886b365e-3105-424a-8972-7476238b54d7/
/analysis-steps/IGVFWF8837BHJV-gersbach-facs-crispr-screen-quantification-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/samtools-v1.3.1/
released
886b365e-3105-424a-8972-7476238b54d7
886b365e-3105-424a-8972-7476238b54d7
/analysis-step-versions/85a076e7-4167-4a08-a523-905fc3ee1b8b/
/analysis-steps/IGVFWF6032PEGT-mprasnakeflow-assignment-step/
/awards/HG011966/
/labs/martin-kircher/
/software-versions/mprasnakeflow-assignment-v0.3.0/
released
85a076e7-4167-4a08-a523-905fc3ee1b8b
85a076e7-4167-4a08-a523-905fc3ee1b8b
/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/
ali-mortazavi:uci-scrna-seq-counts-normalization-and-filtering-step_v1
/analysis-steps/IGVFWF6241JYDF-uci-scrna-seq-counts-normalization-and-filtering-step/
/awards/HG012077/
/labs/ali-mortazavi/
/software-versions/scanpy-v1.10.2/
released
84d923e3-9027-4aaf-a611-eff429b4348c
84d923e3-9027-4aaf-a611-eff429b4348c
/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/
/analysis-steps/IGVFWF2849QJOS-hicar-quantification-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/hicar-quantification-v1.0.0/
released
7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e
7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
ali-mortazavi:uci-scrna-seq-kallisto-quantification-step_v1
/analysis-steps/IGVFWF6241JYDF-uci-scrna-seq-kallisto-quantification-step/
/awards/HG012077/
/labs/ali-mortazavi/
/software-versions/kallisto-v0.50.1/
,
/software-versions/bustools-v0.43.2/
,
/software-versions/kb-python-v0.28.2/
released
7575fac5-2297-495f-ad92-000d9acf05f6
7575fac5-2297-495f-ad92-000d9acf05f6
/analysis-step-versions/7298947c-9675-4de2-933a-642bde562751/
/analysis-steps/IGVFWF6270QWBB-gersbach-ggr-rna-seq-pipeline-alignment-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/samtools-v1.3.0/
,
/software-versions/star-v2.4.1/
released
7298947c-9675-4de2-933a-642bde562751
7298947c-9675-4de2-933a-642bde562751
/analysis-step-versions/6eedb442-9e3c-4b7f-b666-6b983f47aa15/
/analysis-steps/IGVFWF6411VZLF-gersbach-ggr-atac-seq-pipeline-peak-generation-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/samtools-v1.3.0/
,
/software-versions/macs-v2.1.0/
released
6eedb442-9e3c-4b7f-b666-6b983f47aa15
6eedb442-9e3c-4b7f-b666-6b983f47aa15
/analysis-step-versions/6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2/
/analysis-steps/IGVFWF8837BHJV-gersbach-facs-crispr-screen-differential-expression-analysis-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/deseq2-v1.36.0/
released
6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2
6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
ansuman-satpathy:satpathy-peaks-generation-step-version
/analysis-steps/IGVFWF1453HVEC-satpathy-peaks-generation-step/
/awards/HG012076/
/labs/ansuman-satpathy/
/software-versions/cellranger-atac-v2.0.0/
released
699d6738-4033-4afc-b6f3-1d82a80e0b41
699d6738-4033-4afc-b6f3-1d82a80e0b41
/analysis-step-versions/591f5c4d-08fe-4de1-a25a-d3aef0d39567/
/analysis-steps/IGVFWF5701UESO-gersbach-perturb-seq-differential-expressions-analysis-step/
/awards/HG012053/
/labs/charles-gersbach/
/software-versions/deseq2-v1.36.0/
released
591f5c4d-08fe-4de1-a25a-d3aef0d39567
591f5c4d-08fe-4de1-a25a-d3aef0d39567