{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9796VADK/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9796VADK",
"aliases": [
"igvf:corces_multiplexedSample_X054_G2"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2025-03-19T18:04:51.878651+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1464XWYC/",
"accession": "IGVFDO1464XWYC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2028IGVN/",
"accession": "IGVFDO2028IGVN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2559GIIZ/",
"accession": "IGVFDO2559GIIZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4273OHGB/",
"accession": "IGVFDO4273OHGB",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4825ZGIS/",
"accession": "IGVFDO4825ZGIS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7227BIXW/",
"accession": "IGVFDO7227BIXW",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8800RKVB/",
"accession": "IGVFDO8800RKVB",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9247BEUS/",
"accession": "IGVFDO9247BEUS",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3310NAMG/",
"accession": "IGVFDS3310NAMG",
"aliases": [
"igvf:corces_measurementSet_X054_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9179BFME/",
"accession": "IGVFDS9179BFME",
"aliases": [
"igvf:corces_measurementSet_X054_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM0915KBDA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0915KBDA",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4273OHGB/",
"accession": "IGVFDO4273OHGB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM3451FHCP/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3451FHCP",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9247BEUS/",
"accession": "IGVFDO9247BEUS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM1391TSSU/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1391TSSU",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2028IGVN/",
"accession": "IGVFDO2028IGVN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6109YDRJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6109YDRJ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM9204LVKY/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9204LVKY",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1464XWYC/",
"accession": "IGVFDO1464XWYC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM2291TFUT/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2291TFUT",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8800RKVB/",
"accession": "IGVFDO8800RKVB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 81 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM5523ISNT/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5523ISNT",
"donors": [
{
"@id": "/human-donors/IGVFDO4825ZGIS/",
"accession": "IGVFDO4825ZGIS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 81 years) middle temporal gyrus tissue"
},
{
"@id": "/tissues/IGVFSM2952KWUN/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2952KWUN",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2559GIIZ/",
"accession": "IGVFDO2559GIIZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 78 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6069GUXF/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6069GUXF",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7227BIXW/",
"accession": "IGVFDO7227BIXW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM5054EMST/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5054EMST",
"donors": [
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 79 years) cerebellar cortex tissue"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "multiplexed sample: Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 8 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "feb29b58-b89f-4c0c-a2de-c07fedd7e8d2",
"virtual": false
}