{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9745CPOX/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9745CPOX",
"aliases": [
"jimmie-ye:XX14-SC4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM9745CPOX](/multiplexed-samples/IGVFSM9745CPOX/) has in progress subobject tabular file [IGVFFI1476PAFI](/tabular-files/IGVFFI1476PAFI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9745CPOX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI1476PAFI/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:58.026451+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0091WOLC/",
"accession": "IGVFDO0091WOLC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0394QZIU/",
"accession": "IGVFDO0394QZIU",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0468PVKJ/",
"accession": "IGVFDO0468PVKJ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0544ZLUX/",
"accession": "IGVFDO0544ZLUX",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2089JEFB/",
"accession": "IGVFDO2089JEFB",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3270LSDU/",
"accession": "IGVFDO3270LSDU",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3573HTIO/",
"accession": "IGVFDO3573HTIO",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3920USMS/",
"accession": "IGVFDO3920USMS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4363YRSV/",
"accession": "IGVFDO4363YRSV",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4410IVUC/",
"accession": "IGVFDO4410IVUC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5831DKJT/",
"accession": "IGVFDO5831DKJT",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6041DLFI/",
"accession": "IGVFDO6041DLFI",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7229GQGF/",
"accession": "IGVFDO7229GQGF",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7340NFUW/",
"accession": "IGVFDO7340NFUW",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7477OHFR/",
"accession": "IGVFDO7477OHFR",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7678FIRH/",
"accession": "IGVFDO7678FIRH",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8172HGQW/",
"accession": "IGVFDO8172HGQW",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8283BHRN/",
"accession": "IGVFDO8283BHRN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9496ZYBE/",
"accession": "IGVFDO9496ZYBE",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9760DKTN/",
"accession": "IGVFDO9760DKTN",
"ethnicities": [
"African American"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6323NFTV/",
"accession": "IGVFDS6323NFTV",
"aliases": [
"jimmie-ye:XX14-SC4_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2606ZOFX/",
"accession": "IGVFDS2606ZOFX",
"aliases": [
"jimmie-ye:XX14-SC4_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3412IOIN/",
"accession": "IGVFDS3412IOIN",
"aliases": [
"jimmie-ye:XX14-SC4-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM4220TRXA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4220TRXA",
"donors": [
{
"@id": "/human-donors/IGVFDO8283BHRN/",
"accession": "IGVFDO8283BHRN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 44.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3442UKWC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3442UKWC",
"donors": [
{
"@id": "/human-donors/IGVFDO9496ZYBE/",
"accession": "IGVFDO9496ZYBE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 50.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5805QFAS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5805QFAS",
"donors": [
{
"@id": "/human-donors/IGVFDO4410IVUC/",
"accession": "IGVFDO4410IVUC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 22.80252922 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6856GTTA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6856GTTA",
"donors": [
{
"@id": "/human-donors/IGVFDO7229GQGF/",
"accession": "IGVFDO7229GQGF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5292CPBJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5292CPBJ",
"donors": [
{
"@id": "/human-donors/IGVFDO6041DLFI/",
"accession": "IGVFDO6041DLFI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8042ETCI/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8042ETCI",
"donors": [
{
"@id": "/human-donors/IGVFDO7678FIRH/",
"accession": "IGVFDO7678FIRH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1073WYAS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1073WYAS",
"donors": [
{
"@id": "/human-donors/IGVFDO8172HGQW/",
"accession": "IGVFDO8172HGQW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8988RAAL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8988RAAL",
"donors": [
{
"@id": "/human-donors/IGVFDO7340NFUW/",
"accession": "IGVFDO7340NFUW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 48.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4845BCUH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4845BCUH",
"donors": [
{
"@id": "/human-donors/IGVFDO3270LSDU/",
"accession": "IGVFDO3270LSDU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8594HTBW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8594HTBW",
"donors": [
{
"@id": "/human-donors/IGVFDO0468PVKJ/",
"accession": "IGVFDO0468PVKJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2241FGDO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2241FGDO",
"donors": [
{
"@id": "/human-donors/IGVFDO2089JEFB/",
"accession": "IGVFDO2089JEFB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4450IOZA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4450IOZA",
"donors": [
{
"@id": "/human-donors/IGVFDO0091WOLC/",
"accession": "IGVFDO0091WOLC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0747OTXJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0747OTXJ",
"donors": [
{
"@id": "/human-donors/IGVFDO3920USMS/",
"accession": "IGVFDO3920USMS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5337VPYB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5337VPYB",
"donors": [
{
"@id": "/human-donors/IGVFDO5831DKJT/",
"accession": "IGVFDO5831DKJT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 49.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0355QOZY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0355QOZY",
"donors": [
{
"@id": "/human-donors/IGVFDO0394QZIU/",
"accession": "IGVFDO0394QZIU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8999KCBB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8999KCBB",
"donors": [
{
"@id": "/human-donors/IGVFDO4363YRSV/",
"accession": "IGVFDO4363YRSV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 21.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0751SZDO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0751SZDO",
"donors": [
{
"@id": "/human-donors/IGVFDO7477OHFR/",
"accession": "IGVFDO7477OHFR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9439FKWE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9439FKWE",
"donors": [
{
"@id": "/human-donors/IGVFDO3573HTIO/",
"accession": "IGVFDO3573HTIO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8359XQVF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8359XQVF",
"donors": [
{
"@id": "/human-donors/IGVFDO0544ZLUX/",
"accession": "IGVFDO0544ZLUX",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4486KKLR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4486KKLR",
"donors": [
{
"@id": "/human-donors/IGVFDO9760DKTN/",
"accession": "IGVFDO9760DKTN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "cf14c89e-25c8-467c-a255-e40cd9ce3b2c",
"virtual": false
}