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IMR-90 — IGVFSM9642EHZY

released
Summary
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
Multiplexing Method
barcode based
Sources
Cellular Sub Pool
2
Barcode Map
IGVFFI8343LJPE
Taxa
Homo sapiens
Aliases
ansuman-satpathy:multiplexed_sample_igvf18_10x2
Protocols

Donors

6 items
Aliases
  • igvf:donor_of_HCT116
male
Homo sapiens
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_teloHAEC
female
Homo sapiens
  • igvf:donor_of_IMR90
female
Homo sapiens
  • igvf:donor_of_MCF7
female
Homo sapiens
  • igvf:donor_of_SKNSH
female
Homo sapiens

File Sets

4 items
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf18_analysis_set
Ansuman Satpathy, Stanford
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf18_10x2
Ansuman Satpathy, Stanford
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf18_10x2
Ansuman Satpathy, Stanford
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf18_10x2
Ansuman Satpathy, Stanford

Multiplexed Samples

19 items
Sample Terms
Summary
InVitroSystem
IMR-90 cell line, female, Homo sapiens
InVitroSystem
MCF-7 cell line, female, Homo sapiens
InVitroSystem
TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours
InVitroSystem
HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days, Homo sapiens
InVitroSystem
HCT116 cell line, male, Homo sapiens
InVitroSystem
HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days, Homo sapiens
InVitroSystem
SK-N-SH cell line, female, Homo sapiens
InVitroSystem
SK-N-SH cell line, female, Homo sapiens
InVitroSystem
TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours
InVitroSystem
HCT116 cell line, male, Homo sapiens

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford