{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9386ETNP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9386ETNP",
"aliases": [
"igvf:corces_multiplexedSample_RP009_G4"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2025-03-19T18:08:07.581153+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0802OVOD/",
"accession": "IGVFDO0802OVOD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0967LMSM/",
"accession": "IGVFDO0967LMSM",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1302YEPX/",
"accession": "IGVFDO1302YEPX",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2028IGVN/",
"accession": "IGVFDO2028IGVN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4108VCBA/",
"accession": "IGVFDO4108VCBA",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4825ZGIS/",
"accession": "IGVFDO4825ZGIS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5410JIJT/",
"accession": "IGVFDO5410JIJT",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7815RLQM/",
"accession": "IGVFDO7815RLQM",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8891KXRJ/",
"accession": "IGVFDO8891KXRJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9247BEUS/",
"accession": "IGVFDO9247BEUS",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9058STTC/",
"accession": "IGVFDS9058STTC",
"aliases": [
"igvf:corces_measurementSet_RP009_G4_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3397BHVF/",
"accession": "IGVFDS3397BHVF",
"aliases": [
"igvf:corces_measurementSet_RP009_G4_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM7097XUZI/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7097XUZI",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1302YEPX/",
"accession": "IGVFDO1302YEPX",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM9550JLTC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9550JLTC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4108VCBA/",
"accession": "IGVFDO4108VCBA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM5077DQMX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5077DQMX",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5410JIJT/",
"accession": "IGVFDO5410JIJT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM8973ZZZR/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8973ZZZR",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 82 years) posterior cingulate gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis"
},
{
"@id": "/tissues/IGVFSM3520FSTJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3520FSTJ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0802OVOD/",
"accession": "IGVFDO0802OVOD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 78 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM1448ZHRX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1448ZHRX",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2028IGVN/",
"accession": "IGVFDO2028IGVN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6118HVCN/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6118HVCN",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7815RLQM/",
"accession": "IGVFDO7815RLQM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 72 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM5509ETOZ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5509ETOZ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM3154NSAO/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3154NSAO",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9247BEUS/",
"accession": "IGVFDO9247BEUS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM3434FJOI/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3434FJOI",
"donors": [
{
"@id": "/human-donors/IGVFDO4825ZGIS/",
"accession": "IGVFDO4825ZGIS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 81 years) substantia nigra tissue"
},
{
"@id": "/tissues/IGVFSM6711ALHO/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6711ALHO",
"donors": [
{
"@id": "/human-donors/IGVFDO8891KXRJ/",
"accession": "IGVFDO8891KXRJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 52 years) substantia nigra tissue"
},
{
"@id": "/tissues/IGVFSM8191RNGD/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8191RNGD",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0967LMSM/",
"accession": "IGVFDO0967LMSM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 84 years) substantia nigra tissue associated with Parkinson's disease"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "a7acc180-9019-42fe-89a2-1247f9590818",
"virtual": false
}