{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9333JIPE/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9333JIPE",
"aliases": [
"jimmie-ye:XX13-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM9333JIPE](/multiplexed-samples/IGVFSM9333JIPE/) has in progress subobject tabular file [IGVFFI8633QBQA](/tabular-files/IGVFFI8633QBQA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9333JIPE/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI8633QBQA/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:54.588135+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0364KNYG/",
"accession": "IGVFDO0364KNYG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0577ZTTT/",
"accession": "IGVFDO0577ZTTT",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0777MUKN/",
"accession": "IGVFDO0777MUKN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1027HBVY/",
"accession": "IGVFDO1027HBVY",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1066JZNA/",
"accession": "IGVFDO1066JZNA",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1097IKXR/",
"accession": "IGVFDO1097IKXR",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1431PEQH/",
"accession": "IGVFDO1431PEQH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1870LLCO/",
"accession": "IGVFDO1870LLCO",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2365MMJN/",
"accession": "IGVFDO2365MMJN",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3218MIST/",
"accession": "IGVFDO3218MIST",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3995JKZD/",
"accession": "IGVFDO3995JKZD",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4344ULCN/",
"accession": "IGVFDO4344ULCN",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5633SKYS/",
"accession": "IGVFDO5633SKYS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5968LZUB/",
"accession": "IGVFDO5968LZUB",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6084DHNM/",
"accession": "IGVFDO6084DHNM",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7136VCWD/",
"accession": "IGVFDO7136VCWD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7281XCFY/",
"accession": "IGVFDO7281XCFY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7757AKTF/",
"accession": "IGVFDO7757AKTF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7762UKWA/",
"accession": "IGVFDO7762UKWA",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9258XPYT/",
"accession": "IGVFDO9258XPYT",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6624LIQT/",
"accession": "IGVFDS6624LIQT",
"aliases": [
"jimmie-ye:XX13-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0476WNKK/",
"accession": "IGVFDS0476WNKK",
"aliases": [
"jimmie-ye:XX13-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3116ZOKO/",
"accession": "IGVFDS3116ZOKO",
"aliases": [
"jimmie-ye:XX13-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "10x multiome: fragments, index"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM4011YWCY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4011YWCY",
"donors": [
{
"@id": "/human-donors/IGVFDO7757AKTF/",
"accession": "IGVFDO7757AKTF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 49.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1458FKOR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1458FKOR",
"donors": [
{
"@id": "/human-donors/IGVFDO1097IKXR/",
"accession": "IGVFDO1097IKXR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5367RPJZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5367RPJZ",
"donors": [
{
"@id": "/human-donors/IGVFDO1027HBVY/",
"accession": "IGVFDO1027HBVY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7333NALI/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7333NALI",
"donors": [
{
"@id": "/human-donors/IGVFDO0577ZTTT/",
"accession": "IGVFDO0577ZTTT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9961KGIZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9961KGIZ",
"donors": [
{
"@id": "/human-donors/IGVFDO4344ULCN/",
"accession": "IGVFDO4344ULCN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1292NJJB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1292NJJB",
"donors": [
{
"@id": "/human-donors/IGVFDO7136VCWD/",
"accession": "IGVFDO7136VCWD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4794HQXU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4794HQXU",
"donors": [
{
"@id": "/human-donors/IGVFDO0777MUKN/",
"accession": "IGVFDO0777MUKN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5107LQXP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5107LQXP",
"donors": [
{
"@id": "/human-donors/IGVFDO0364KNYG/",
"accession": "IGVFDO0364KNYG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6129ABLM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6129ABLM",
"donors": [
{
"@id": "/human-donors/IGVFDO6084DHNM/",
"accession": "IGVFDO6084DHNM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4712MIKX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4712MIKX",
"donors": [
{
"@id": "/human-donors/IGVFDO1066JZNA/",
"accession": "IGVFDO1066JZNA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7020ZFCH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7020ZFCH",
"donors": [
{
"@id": "/human-donors/IGVFDO3995JKZD/",
"accession": "IGVFDO3995JKZD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3100RZOA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3100RZOA",
"donors": [
{
"@id": "/human-donors/IGVFDO5633SKYS/",
"accession": "IGVFDO5633SKYS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 36.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0239MWAM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0239MWAM",
"donors": [
{
"@id": "/human-donors/IGVFDO1431PEQH/",
"accession": "IGVFDO1431PEQH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9303FNIV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9303FNIV",
"donors": [
{
"@id": "/human-donors/IGVFDO1870LLCO/",
"accession": "IGVFDO1870LLCO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 45.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1594GVRV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1594GVRV",
"donors": [
{
"@id": "/human-donors/IGVFDO9258XPYT/",
"accession": "IGVFDO9258XPYT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 54.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0445PQWN/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0445PQWN",
"donors": [
{
"@id": "/human-donors/IGVFDO7762UKWA/",
"accession": "IGVFDO7762UKWA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9123UOER/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9123UOER",
"donors": [
{
"@id": "/human-donors/IGVFDO7281XCFY/",
"accession": "IGVFDO7281XCFY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9009RUUU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9009RUUU",
"donors": [
{
"@id": "/human-donors/IGVFDO3218MIST/",
"accession": "IGVFDO3218MIST",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4616XCHR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4616XCHR",
"donors": [
{
"@id": "/human-donors/IGVFDO5968LZUB/",
"accession": "IGVFDO5968LZUB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3772TKDJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3772TKDJ",
"donors": [
{
"@id": "/human-donors/IGVFDO2365MMJN/",
"accession": "IGVFDO2365MMJN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "4c878440-ba60-4c26-954b-3af9a9c66751",
"virtual": false
}