{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9228JYFS/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9228JYFS",
"aliases": [
"jimmie-ye:XX1-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM9228JYFS](/multiplexed-samples/IGVFSM9228JYFS/) has in progress subobject tabular file [IGVFFI6951EAIA](/tabular-files/IGVFFI6951EAIA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9228JYFS/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI6951EAIA/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:44.800968+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0482ODYZ/",
"accession": "IGVFDO0482ODYZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0732DHQV/",
"accession": "IGVFDO0732DHQV",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0964WFMG/",
"accession": "IGVFDO0964WFMG",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1395GBBU/",
"accession": "IGVFDO1395GBBU",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2504IPYF/",
"accession": "IGVFDO2504IPYF",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2596DYYJ/",
"accession": "IGVFDO2596DYYJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3075RUWO/",
"accession": "IGVFDO3075RUWO",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3639GJJR/",
"accession": "IGVFDO3639GJJR",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4413BDDJ/",
"accession": "IGVFDO4413BDDJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5511NOFN/",
"accession": "IGVFDO5511NOFN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7496IJLR/",
"accession": "IGVFDO7496IJLR",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7601PQPP/",
"accession": "IGVFDO7601PQPP",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7809BPPZ/",
"accession": "IGVFDO7809BPPZ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7920XASX/",
"accession": "IGVFDO7920XASX",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8115DEWB/",
"accession": "IGVFDO8115DEWB",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8148OKTM/",
"accession": "IGVFDO8148OKTM",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8556EGLK/",
"accession": "IGVFDO8556EGLK",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8823OZVJ/",
"accession": "IGVFDO8823OZVJ",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9086RDRA/",
"accession": "IGVFDO9086RDRA",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9541JAXV/",
"accession": "IGVFDO9541JAXV",
"ethnicities": [
"Asian"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS5514ZVEH/",
"accession": "IGVFDS5514ZVEH",
"aliases": [
"jimmie-ye:XX1-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7029XULI/",
"accession": "IGVFDS7029XULI",
"aliases": [
"jimmie-ye:XX1-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3451FQXE/",
"accession": "IGVFDS3451FQXE",
"aliases": [
"jimmie-ye:XX1-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM5145CAYT/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5145CAYT",
"donors": [
{
"@id": "/human-donors/IGVFDO0482ODYZ/",
"accession": "IGVFDO0482ODYZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 36.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2889VREC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2889VREC",
"donors": [
{
"@id": "/human-donors/IGVFDO0964WFMG/",
"accession": "IGVFDO0964WFMG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5492MCAP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5492MCAP",
"donors": [
{
"@id": "/human-donors/IGVFDO5511NOFN/",
"accession": "IGVFDO5511NOFN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4935PXLQ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4935PXLQ",
"donors": [
{
"@id": "/human-donors/IGVFDO2596DYYJ/",
"accession": "IGVFDO2596DYYJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1662WZPJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1662WZPJ",
"donors": [
{
"@id": "/human-donors/IGVFDO3639GJJR/",
"accession": "IGVFDO3639GJJR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 22.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1220MZRE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1220MZRE",
"donors": [
{
"@id": "/human-donors/IGVFDO8115DEWB/",
"accession": "IGVFDO8115DEWB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2050VKFL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2050VKFL",
"donors": [
{
"@id": "/human-donors/IGVFDO8823OZVJ/",
"accession": "IGVFDO8823OZVJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0521AFST/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0521AFST",
"donors": [
{
"@id": "/human-donors/IGVFDO4413BDDJ/",
"accession": "IGVFDO4413BDDJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 39.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6429EULD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6429EULD",
"donors": [
{
"@id": "/human-donors/IGVFDO2504IPYF/",
"accession": "IGVFDO2504IPYF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 22.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4119OXEV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4119OXEV",
"donors": [
{
"@id": "/human-donors/IGVFDO8556EGLK/",
"accession": "IGVFDO8556EGLK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0166CLKE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0166CLKE",
"donors": [
{
"@id": "/human-donors/IGVFDO3075RUWO/",
"accession": "IGVFDO3075RUWO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3998DQEZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3998DQEZ",
"donors": [
{
"@id": "/human-donors/IGVFDO7601PQPP/",
"accession": "IGVFDO7601PQPP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8862GGAG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8862GGAG",
"donors": [
{
"@id": "/human-donors/IGVFDO0732DHQV/",
"accession": "IGVFDO0732DHQV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3149LXSZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3149LXSZ",
"donors": [
{
"@id": "/human-donors/IGVFDO9086RDRA/",
"accession": "IGVFDO9086RDRA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0320PHSK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0320PHSK",
"donors": [
{
"@id": "/human-donors/IGVFDO9541JAXV/",
"accession": "IGVFDO9541JAXV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4756EIOC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4756EIOC",
"donors": [
{
"@id": "/human-donors/IGVFDO1395GBBU/",
"accession": "IGVFDO1395GBBU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 45.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4905LLAZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4905LLAZ",
"donors": [
{
"@id": "/human-donors/IGVFDO7496IJLR/",
"accession": "IGVFDO7496IJLR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7966CMTM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7966CMTM",
"donors": [
{
"@id": "/human-donors/IGVFDO7809BPPZ/",
"accession": "IGVFDO7809BPPZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 40.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1586TBQU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1586TBQU",
"donors": [
{
"@id": "/human-donors/IGVFDO7920XASX/",
"accession": "IGVFDO7920XASX",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 50.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0142XFSP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0142XFSP",
"donors": [
{
"@id": "/human-donors/IGVFDO8148OKTM/",
"accession": "IGVFDO8148OKTM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "5afec058-e2cc-4d77-84e6-132dcf87204e",
"virtual": false
}