{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9160FXRO/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9160FXRO",
"aliases": [
"jimmie-ye:XX21-SC4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM9160FXRO](/multiplexed-samples/IGVFSM9160FXRO/) has in progress subobject tabular file [IGVFFI8936KRTC](/tabular-files/IGVFFI8936KRTC/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9160FXRO/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI8936KRTC/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:14.437636+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0611IZWA/",
"accession": "IGVFDO0611IZWA",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2048BWRE/",
"accession": "IGVFDO2048BWRE",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2361OBZE/",
"accession": "IGVFDO2361OBZE",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4594LLFH/",
"accession": "IGVFDO4594LLFH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4784WLQO/",
"accession": "IGVFDO4784WLQO",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5571SMGN/",
"accession": "IGVFDO5571SMGN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5699YUZO/",
"accession": "IGVFDO5699YUZO",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6046LEPN/",
"accession": "IGVFDO6046LEPN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6151SZBQ/",
"accession": "IGVFDO6151SZBQ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6660JHLZ/",
"accession": "IGVFDO6660JHLZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7140KYZW/",
"accession": "IGVFDO7140KYZW",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7252RBFS/",
"accession": "IGVFDO7252RBFS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7990GJJE/",
"accession": "IGVFDO7990GJJE",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8133DBEU/",
"accession": "IGVFDO8133DBEU",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8543HWWK/",
"accession": "IGVFDO8543HWWK",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9189QQXN/",
"accession": "IGVFDO9189QQXN",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9988IKUM/",
"accession": "IGVFDO9988IKUM",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3245PEOK/",
"accession": "IGVFDS3245PEOK",
"aliases": [
"jimmie-ye:XX21-SC4_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7129ASVR/",
"accession": "IGVFDS7129ASVR",
"aliases": [
"jimmie-ye:XX21-SC4_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS6116UVVK/",
"accession": "IGVFDS6116UVVK",
"aliases": [
"jimmie-ye:XX21-SC4-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM0612NMSM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0612NMSM",
"donors": [
{
"@id": "/human-donors/IGVFDO7252RBFS/",
"accession": "IGVFDO7252RBFS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2787ZBHD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2787ZBHD",
"donors": [
{
"@id": "/human-donors/IGVFDO6046LEPN/",
"accession": "IGVFDO6046LEPN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7209NSFX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7209NSFX",
"donors": [
{
"@id": "/human-donors/IGVFDO7990GJJE/",
"accession": "IGVFDO7990GJJE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9316QAEY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9316QAEY",
"donors": [
{
"@id": "/human-donors/IGVFDO8543HWWK/",
"accession": "IGVFDO8543HWWK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4574YLQJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4574YLQJ",
"donors": [
{
"@id": "/human-donors/IGVFDO7140KYZW/",
"accession": "IGVFDO7140KYZW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4379OVHX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4379OVHX",
"donors": [
{
"@id": "/human-donors/IGVFDO2361OBZE/",
"accession": "IGVFDO2361OBZE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 56.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4167VGZA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4167VGZA",
"donors": [
{
"@id": "/human-donors/IGVFDO0611IZWA/",
"accession": "IGVFDO0611IZWA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7155MTVY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7155MTVY",
"donors": [
{
"@id": "/human-donors/IGVFDO6151SZBQ/",
"accession": "IGVFDO6151SZBQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8207YDUT/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8207YDUT",
"donors": [
{
"@id": "/human-donors/IGVFDO5699YUZO/",
"accession": "IGVFDO5699YUZO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8602CDXW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8602CDXW",
"donors": [
{
"@id": "/human-donors/IGVFDO9189QQXN/",
"accession": "IGVFDO9189QQXN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 18.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7809RHXV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7809RHXV",
"donors": [
{
"@id": "/human-donors/IGVFDO9988IKUM/",
"accession": "IGVFDO9988IKUM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3653TPCF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3653TPCF",
"donors": [
{
"@id": "/human-donors/IGVFDO4594LLFH/",
"accession": "IGVFDO4594LLFH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8198KJCS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8198KJCS",
"donors": [
{
"@id": "/human-donors/IGVFDO4784WLQO/",
"accession": "IGVFDO4784WLQO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5008ECFY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5008ECFY",
"donors": [
{
"@id": "/human-donors/IGVFDO6660JHLZ/",
"accession": "IGVFDO6660JHLZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3516FRID/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3516FRID",
"donors": [
{
"@id": "/human-donors/IGVFDO8133DBEU/",
"accession": "IGVFDO8133DBEU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1916WLRF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1916WLRF",
"donors": [
{
"@id": "/human-donors/IGVFDO2048BWRE/",
"accession": "IGVFDO2048BWRE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 44.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9460PJVD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9460PJVD",
"donors": [
{
"@id": "/human-donors/IGVFDO5571SMGN/",
"accession": "IGVFDO5571SMGN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 44.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 44.0 years) peripheral blood mononuclear cell; ... and 15 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "36d08d8b-ee5a-4b6d-9bc9-91ad99206752",
"virtual": false
}