RUES2 — IGVFSM9149ZACE

released
{
    "@context": "/terms/",
    "@id": "/multiplexed-samples/IGVFSM9149ZACE/",
    "@type": [
        "MultiplexedSample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM9149ZACE",
    "aliases": [
        "ansuman-satpathy:multiplexed_sample_igvf17_10x4"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "barcode_map": "/tabular-files/IGVFFI8290RCZJ/",
    "biomarkers": [],
    "cellular_sub_pool": "4",
    "classifications": [
        "differentiated cell specimen",
        "multiplexed sample"
    ],
    "creation_timestamp": "2025-01-27T22:54:47.324006+00:00",
    "disease_terms": [],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO5261UCLF/",
            "accession": "IGVFDO5261UCLF",
            "status": "released"
        }
    ],
    "file_sets": [
        {
            "@id": "/auxiliary-sets/IGVFDS5763YUNI/",
            "accession": "IGVFDS5763YUNI",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf17_10x4"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS9133EBOD/",
            "accession": "IGVFDS9133EBOD",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf17_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS1381KOVA/",
            "accession": "IGVFDS1381KOVA",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf17_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/analysis-sets/IGVFDS0398ALPE/",
            "accession": "IGVFDS0398ALPE",
            "aliases": [
                "ansuman-satpathy:igvf17_analysis_set"
            ],
            "file_set_type": "intermediate analysis",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
        }
    ],
    "institutional_certificates": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "modifications": [],
    "multiplexed_in": [],
    "multiplexed_samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM8521AYSS/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8521AYSS",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM7387CQPA/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7387CQPA",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0203USTG/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0203USTG",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM8080AMZS/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8080AMZS",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0076MDTS/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0076MDTS",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM6846CRMN/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6846CRMN",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM4994HEBE/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4994HEBE",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 3 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2839SOTP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2839SOTP",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 3 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2091KEPO/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2091KEPO",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 4 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM6906WEMB/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6906WEMB",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 4 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM9008PYYP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9008PYYP",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 5 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM5241IMRP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM5241IMRP",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5261UCLF/",
                    "accession": "IGVFDO5261UCLF",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009320/",
                    "status": "released",
                    "term_name": "RUES2"
                }
            ],
            "status": "released",
            "summary": "RUES2 differentiated cell specimen induced to gastrula for 5 days, female, Homo sapiens"
        }
    ],
    "multiplexing_methods": [
        "barcode based"
    ],
    "origin_of": [],
    "protocols": [
        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
    ],
    "release_timestamp": "2025-03-07T01:17:00.935944+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/EFO_0009320/",
            "status": "released",
            "term_name": "RUES2"
        }
    ],
    "schema_version": "10",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/jay-shendure/",
            "status": "current",
            "title": "Jay Shendure, UW"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
    "taxa": "Homo sapiens",
    "treatments": [],
    "uuid": "ee4fda40-c683-414b-901a-d9687ccc918e",
    "virtual": false
}