{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM9062JXMC/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9062JXMC",
"aliases": [
"jimmie-ye:XX4-SC3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM9062JXMC](/multiplexed-samples/IGVFSM9062JXMC/) has in progress subobject tabular file [IGVFFI2914ZHXY](/tabular-files/IGVFFI2914ZHXY/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM9062JXMC/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI2914ZHXY/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:23.029880+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0693WHDO/",
"accession": "IGVFDO0693WHDO",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0949TFKB/",
"accession": "IGVFDO0949TFKB",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1058UGTG/",
"accession": "IGVFDO1058UGTG",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2021APNL/",
"accession": "IGVFDO2021APNL",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2190NONJ/",
"accession": "IGVFDO2190NONJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3454XWIE/",
"accession": "IGVFDO3454XWIE",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4571QKZK/",
"accession": "IGVFDO4571QKZK",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4886CNWA/",
"accession": "IGVFDO4886CNWA",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4901ABDD/",
"accession": "IGVFDO4901ABDD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5528NPVR/",
"accession": "IGVFDO5528NPVR",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5870JEEY/",
"accession": "IGVFDO5870JEEY",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5923RXDV/",
"accession": "IGVFDO5923RXDV",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6095BMCF/",
"accession": "IGVFDO6095BMCF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6511JYDS/",
"accession": "IGVFDO6511JYDS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6534KMCD/",
"accession": "IGVFDO6534KMCD",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6660JHLZ/",
"accession": "IGVFDO6660JHLZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6906WDER/",
"accession": "IGVFDO6906WDER",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7493FFMW/",
"accession": "IGVFDO7493FFMW",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7799ZAIB/",
"accession": "IGVFDO7799ZAIB",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8494GGFB/",
"accession": "IGVFDO8494GGFB",
"ethnicities": [
"Asian"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6082PVJJ/",
"accession": "IGVFDS6082PVJJ",
"aliases": [
"jimmie-ye:XX4-SC3_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6431QGJL/",
"accession": "IGVFDS6431QGJL",
"aliases": [
"jimmie-ye:XX4-SC3_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS2292WXBW/",
"accession": "IGVFDS2292WXBW",
"aliases": [
"jimmie-ye:XX4-SC3-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM9932GTMF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9932GTMF",
"donors": [
{
"@id": "/human-donors/IGVFDO4886CNWA/",
"accession": "IGVFDO4886CNWA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6179KJCL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6179KJCL",
"donors": [
{
"@id": "/human-donors/IGVFDO0949TFKB/",
"accession": "IGVFDO0949TFKB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 41.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5064BXMK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5064BXMK",
"donors": [
{
"@id": "/human-donors/IGVFDO8494GGFB/",
"accession": "IGVFDO8494GGFB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6513GLNW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6513GLNW",
"donors": [
{
"@id": "/human-donors/IGVFDO6660JHLZ/",
"accession": "IGVFDO6660JHLZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5433OEJG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5433OEJG",
"donors": [
{
"@id": "/human-donors/IGVFDO2190NONJ/",
"accession": "IGVFDO2190NONJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4774ALYO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4774ALYO",
"donors": [
{
"@id": "/human-donors/IGVFDO6906WDER/",
"accession": "IGVFDO6906WDER",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1294JMBD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1294JMBD",
"donors": [
{
"@id": "/human-donors/IGVFDO5528NPVR/",
"accession": "IGVFDO5528NPVR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4625FBGH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4625FBGH",
"donors": [
{
"@id": "/human-donors/IGVFDO4901ABDD/",
"accession": "IGVFDO4901ABDD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8447FQPX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8447FQPX",
"donors": [
{
"@id": "/human-donors/IGVFDO4571QKZK/",
"accession": "IGVFDO4571QKZK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0949XUGL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0949XUGL",
"donors": [
{
"@id": "/human-donors/IGVFDO0693WHDO/",
"accession": "IGVFDO0693WHDO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 51.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0346KRDO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0346KRDO",
"donors": [
{
"@id": "/human-donors/IGVFDO6095BMCF/",
"accession": "IGVFDO6095BMCF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 51.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9452QBHZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9452QBHZ",
"donors": [
{
"@id": "/human-donors/IGVFDO5870JEEY/",
"accession": "IGVFDO5870JEEY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 37.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9391PHUA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9391PHUA",
"donors": [
{
"@id": "/human-donors/IGVFDO1058UGTG/",
"accession": "IGVFDO1058UGTG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0163YZQC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0163YZQC",
"donors": [
{
"@id": "/human-donors/IGVFDO5923RXDV/",
"accession": "IGVFDO5923RXDV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0075YCKO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0075YCKO",
"donors": [
{
"@id": "/human-donors/IGVFDO2021APNL/",
"accession": "IGVFDO2021APNL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3465ZMYK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3465ZMYK",
"donors": [
{
"@id": "/human-donors/IGVFDO7799ZAIB/",
"accession": "IGVFDO7799ZAIB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 40.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7177QMLF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7177QMLF",
"donors": [
{
"@id": "/human-donors/IGVFDO7493FFMW/",
"accession": "IGVFDO7493FFMW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9869JYDG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9869JYDG",
"donors": [
{
"@id": "/human-donors/IGVFDO6511JYDS/",
"accession": "IGVFDO6511JYDS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6616ACDI/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6616ACDI",
"donors": [
{
"@id": "/human-donors/IGVFDO3454XWIE/",
"accession": "IGVFDO3454XWIE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0041TDZL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0041TDZL",
"donors": [
{
"@id": "/human-donors/IGVFDO6534KMCD/",
"accession": "IGVFDO6534KMCD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "aecbb088-de2a-4ca4-bb80-ee3c3396b5a1",
"virtual": false
}