putamen — IGVFSM8971IRDZ

{
    "@context": "/terms/",
    "@id": "/multiplexed-samples/IGVFSM8971IRDZ/",
    "@type": [
        "MultiplexedSample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM8971IRDZ",
    "aliases": [
        "igvf:corces_multiplexedSample_X042_G1"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "biomarkers": [],
    "classifications": [
        "tissue",
        "multiplexed sample"
    ],
    "creation_timestamp": "2025-03-19T18:01:46.340463+00:00",
    "disease_terms": [
        {
            "@id": "/phenotype-terms/DOID_0080832/",
            "status": "in progress",
            "term_name": "mild cognitive impairment"
        },
        {
            "@id": "/phenotype-terms/DOID_14330/",
            "status": "in progress",
            "term_name": "Parkinson's disease"
        },
        {
            "@id": "/phenotype-terms/DOID_2377/",
            "status": "in progress",
            "term_name": "multiple sclerosis"
        },
        {
            "@id": "/phenotype-terms/DOID_9246/",
            "status": "in progress",
            "term_name": "cerebral amyloid angiopathy"
        },
        {
            "@id": "/phenotype-terms/MONDO_0004975/",
            "status": "released",
            "term_name": "Alzheimer disease"
        }
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO0565OSFT/",
            "accession": "IGVFDO0565OSFT",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO0698ZMAQ/",
            "accession": "IGVFDO0698ZMAQ",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO0877AIRF/",
            "accession": "IGVFDO0877AIRF",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO0909BNTN/",
            "accession": "IGVFDO0909BNTN",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO1193ADXF/",
            "accession": "IGVFDO1193ADXF",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO1797DNPW/",
            "accession": "IGVFDO1797DNPW",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO3971UIZC/",
            "accession": "IGVFDO3971UIZC",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO4170HAEN/",
            "accession": "IGVFDO4170HAEN",
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO5205IAEO/",
            "accession": "IGVFDO5205IAEO",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO7315DYIP/",
            "accession": "IGVFDO7315DYIP",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO8155MCUV/",
            "accession": "IGVFDO8155MCUV",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        },
        {
            "@id": "/human-donors/IGVFDO8670MHXE/",
            "accession": "IGVFDO8670MHXE",
            "ethnicities": [
                "European"
            ],
            "status": "preview"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS3959TIPT/",
            "accession": "IGVFDS3959TIPT",
            "aliases": [
                "igvf:corces_measurementSet_X042_G1_ATAC"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus ATAC-seq (10x multiome)"
        },
        {
            "@id": "/measurement-sets/IGVFDS8659VRHH/",
            "accession": "IGVFDS8659VRHH",
            "aliases": [
                "igvf:corces_measurementSet_X042_G1_RNA"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ryan Corces, Gladstone Institute UCSF"
            },
            "preferred_assay_title": "10x multiome",
            "status": "preview",
            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
        }
    ],
    "institutional_certificates": [
        {
            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
            "certificate_identifier": "IP115-05",
            "controlled_access": false,
            "status": "in progress"
        }
    ],
    "lab": {
        "@id": "/labs/ryan-corces/",
        "title": "Ryan Corces, Gladstone Institute UCSF"
    },
    "modifications": [],
    "multiplexed_in": [],
    "multiplexed_samples": [
        {
            "@id": "/tissues/IGVFSM5850HYPD/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM5850HYPD",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO0877AIRF/",
                    "accession": "IGVFDO0877AIRF",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0001874/",
                    "status": "preview",
                    "term_name": "putamen"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
        },
        {
            "@id": "/tissues/IGVFSM1905IFKY/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1905IFKY",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/MONDO_0004975/",
                    "status": "released",
                    "term_name": "Alzheimer disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                },
                {
                    "@id": "/phenotype-terms/DOID_2377/",
                    "status": "in progress",
                    "term_name": "multiple sclerosis"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO8155MCUV/",
                    "accession": "IGVFDO8155MCUV",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0001874/",
                    "status": "preview",
                    "term_name": "putamen"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis"
        },
        {
            "@id": "/tissues/IGVFSM1408WVPB/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1408WVPB",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO8670MHXE/",
                    "accession": "IGVFDO8670MHXE",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0001874/",
                    "status": "preview",
                    "term_name": "putamen"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
        },
        {
            "@id": "/tissues/IGVFSM4851SEAT/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4851SEAT",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO0909BNTN/",
                    "accession": "IGVFDO0909BNTN",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002740/",
                    "status": "preview",
                    "term_name": "posterior cingulate gyrus"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease"
        },
        {
            "@id": "/tissues/IGVFSM1973JSAW/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1973JSAW",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1193ADXF/",
                    "accession": "IGVFDO1193ADXF",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002740/",
                    "status": "preview",
                    "term_name": "posterior cingulate gyrus"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
        },
        {
            "@id": "/tissues/IGVFSM6373BFAS/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6373BFAS",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1797DNPW/",
                    "accession": "IGVFDO1797DNPW",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002740/",
                    "status": "preview",
                    "term_name": "posterior cingulate gyrus"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 89 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
        },
        {
            "@id": "/tissues/IGVFSM7468ABII/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7468ABII",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                },
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO7315DYIP/",
                    "accession": "IGVFDO7315DYIP",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002771/",
                    "status": "preview",
                    "term_name": "middle temporal gyrus"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (female, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
        },
        {
            "@id": "/tissues/IGVFSM4554QFXU/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4554QFXU",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO0565OSFT/",
                    "accession": "IGVFDO0565OSFT",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002771/",
                    "status": "preview",
                    "term_name": "middle temporal gyrus"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 84 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
        },
        {
            "@id": "/tissues/IGVFSM9348FXIL/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9348FXIL",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO3971UIZC/",
                    "accession": "IGVFDO3971UIZC",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002129/",
                    "status": "preview",
                    "term_name": "cerebellar cortex"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (female, 82 years) cerebellar cortex tissue associated with Parkinson's disease"
        },
        {
            "@id": "/tissues/IGVFSM7594WVIX/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM7594WVIX",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_14330/",
                    "status": "in progress",
                    "term_name": "Parkinson's disease"
                },
                {
                    "@id": "/phenotype-terms/DOID_0080832/",
                    "status": "in progress",
                    "term_name": "mild cognitive impairment"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO0698ZMAQ/",
                    "accession": "IGVFDO0698ZMAQ",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002129/",
                    "status": "preview",
                    "term_name": "cerebellar cortex"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment"
        },
        {
            "@id": "/tissues/IGVFSM6624QCWH/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM6624QCWH",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO5205IAEO/",
                    "accession": "IGVFDO5205IAEO",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002038/",
                    "status": "preview",
                    "term_name": "substantia nigra"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 79 years) substantia nigra tissue"
        },
        {
            "@id": "/tissues/IGVFSM4726MNFB/",
            "@type": [
                "Tissue",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM4726MNFB",
            "disease_terms": [
                {
                    "@id": "/phenotype-terms/DOID_9246/",
                    "status": "in progress",
                    "term_name": "cerebral amyloid angiopathy"
                }
            ],
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO4170HAEN/",
                    "accession": "IGVFDO4170HAEN",
                    "status": "preview"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/UBERON_0002038/",
                    "status": "preview",
                    "term_name": "substantia nigra"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 72 years) substantia nigra tissue associated with cerebral amyloid angiopathy"
        }
    ],
    "multiplexing_methods": [
        "genetic"
    ],
    "origin_of": [],
    "sample_terms": [
        {
            "@id": "/sample-terms/UBERON_0001874/",
            "status": "preview",
            "term_name": "putamen"
        },
        {
            "@id": "/sample-terms/UBERON_0002038/",
            "status": "preview",
            "term_name": "substantia nigra"
        },
        {
            "@id": "/sample-terms/UBERON_0002129/",
            "status": "preview",
            "term_name": "cerebellar cortex"
        },
        {
            "@id": "/sample-terms/UBERON_0002740/",
            "status": "preview",
            "term_name": "posterior cingulate gyrus"
        },
        {
            "@id": "/sample-terms/UBERON_0002771/",
            "status": "preview",
            "term_name": "middle temporal gyrus"
        }
    ],
    "schema_version": "10",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/sources/banner-health/",
            "status": "released",
            "title": "Banner Health"
        }
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
        "title": "Ryan Corces"
    },
    "summary": "multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples",
    "taxa": "Homo sapiens",
    "treatments": [],
    "uuid": "f9b65599-c65a-459d-bde3-6df629e50916",
    "virtual": false
}