{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8961ZZQN/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8961ZZQN",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf6_10x2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0197UHRX](/in-vitro-systems/IGVFSM0197UHRX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0197UHRX/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5477NVJT](/in-vitro-systems/IGVFSM5477NVJT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5477NVJT/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6746UKGY](/in-vitro-systems/IGVFSM6746UKGY/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6746UKGY/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM8961ZZQN](/multiplexed-samples/IGVFSM8961ZZQN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM8961ZZQN/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2917AFKI](/in-vitro-systems/IGVFSM2917AFKI/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2917AFKI/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4461PEQB](/in-vitro-systems/IGVFSM4461PEQB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4461PEQB/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8373MXSW](/in-vitro-systems/IGVFSM8373MXSW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8373MXSW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7878EBBU](/in-vitro-systems/IGVFSM7878EBBU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7878EBBU/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1797RKIX](/in-vitro-systems/IGVFSM1797RKIX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1797RKIX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI1316HXBQ/",
"biomarkers": [],
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-07-22T00:26:40.608516+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS7320EONJ/",
"accession": "IGVFDS7320EONJ",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4095FWRD/",
"accession": "IGVFDS4095FWRD",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS6310VXMX/",
"accession": "IGVFDS6310VXMX",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4816GMHG/",
"accession": "IGVFDS4816GMHG",
"aliases": [
"ansuman-satpathy:igvf6_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e7a2058d-80fb-46ee-be82-c4d8b26d01ec/",
"certificate_identifier": "IP115-08",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM5477NVJT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5477NVJT",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM7878EBBU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7878EBBU",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 3 days"
},
{
"@id": "/in-vitro-systems/IGVFSM1797RKIX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1797RKIX",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days"
},
{
"@id": "/in-vitro-systems/IGVFSM6746UKGY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6746UKGY",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 11 days"
},
{
"@id": "/in-vitro-systems/IGVFSM0197UHRX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0197UHRX",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days"
},
{
"@id": "/in-vitro-systems/IGVFSM8373MXSW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8373MXSW",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days"
},
{
"@id": "/in-vitro-systems/IGVFSM4461PEQB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4461PEQB",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 32 days"
},
{
"@id": "/in-vitro-systems/IGVFSM2917AFKI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2917AFKI",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 32 days"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:12:43.355274+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/danwei-huangfu/",
"status": "current",
"title": "Danwei Huangfu, MSKCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days; Homo sapiens (male) H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "d36dbb0a-bf24-408c-be50-b75a627fa72e",
"virtual": false
}