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HepG2 — IGVFSM8818QZOF

released
Summary
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Multiplexing Method
barcode based
Sources
Barcode Map
IGVFFI3959KBFR
Taxa
Homo sapiens
Aliases
ansuman-satpathy:multiplexed_sample_igvf3_10x2
Protocols

Donors

3 items
Aliases
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_H9
female
Homo sapiens
  • igvf:donor_of_HepG2
male
Homo sapiens

File Sets

4 items
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf3_10x2
Ansuman Satpathy, Stanford
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf3_10x2
Ansuman Satpathy, Stanford
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf3_10x2
Ansuman Satpathy, Stanford
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf3_analysis_set
Ansuman Satpathy, Stanford

Multiplexed Samples

12 items
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens
InVitroSystem
HepG2 cell line, male, Homo sapiens grown in DMEM without serum
InVitroSystem
HepG2 cell line, male, Homo sapiens grown in DMEM with serum
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days, male, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 8 days, female, Homo sapiens
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days, male, Homo sapiens

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford