peripheral blood mononuclear cell — IGVFSM8525WUDY

preview
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM8525WUDY/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM8525WUDY",
10    "aliases": [
11        "jimmie-ye:XX11-SC1"
12    ],
13    "audit": {
14        "INTERNAL_ACTION": [
15            {
16                "category": "mismatched status",
17                "detail": "Preview multiplexed sample [IGVFSM8525WUDY](/multiplexed-samples/IGVFSM8525WUDY/) has in progress subobject tabular file [IGVFFI2788PQZB](/tabular-files/IGVFFI2788PQZB/).",
18                "level": 30,
19                "level_name": "INTERNAL_ACTION",
20                "name": "audit_item_status",
21                "path": "/multiplexed-samples/IGVFSM8525WUDY/"
22            }
23        ]
24    },
25    "award": {
26        "@id": "/awards/HG012076/",
27        "component": "mapping"
28    },
29    "barcode_map": "/tabular-files/IGVFFI2788PQZB/",
30    "biomarkers": [],
31    "classifications": [
32        "primary cell",
33        "multiplexed sample"
34    ],
35    "creation_timestamp": "2025-03-07T23:18:49.693669+00:00",
36    "description": "Multiplexed PBMC nuclei",
37    "disease_terms": [],
38    "donors": [
39        {
40            "@id": "/human-donors/IGVFDO0091WOLC/",
41            "accession": "IGVFDO0091WOLC",
42            "ethnicities": [
43                "European"
44            ],
45            "status": "preview"
46        },
47        {
48            "@id": "/human-donors/IGVFDO0422WKPO/",
49            "accession": "IGVFDO0422WKPO",
50            "ethnicities": [
51                "European"
52            ],
53            "status": "preview"
54        },
55        {
56            "@id": "/human-donors/IGVFDO1066JZNA/",
57            "accession": "IGVFDO1066JZNA",
58            "ethnicities": [
59                "European"
60            ],
61            "status": "preview"
62        },
63        {
64            "@id": "/human-donors/IGVFDO1152VWOL/",
65            "accession": "IGVFDO1152VWOL",
66            "ethnicities": [
67                "European"
68            ],
69            "status": "preview"
70        },
71        {
72            "@id": "/human-donors/IGVFDO1278WEMK/",
73            "accession": "IGVFDO1278WEMK",
74            "ethnicities": [
75                "Indigenous in North America"
76            ],
77            "status": "preview"
78        },
79        {
80            "@id": "/human-donors/IGVFDO1630CYUK/",
81            "accession": "IGVFDO1630CYUK",
82            "ethnicities": [
83                "Indigenous in North America"
84            ],
85            "status": "preview"
86        },
87        {
88            "@id": "/human-donors/IGVFDO2357UEIZ/",
89            "accession": "IGVFDO2357UEIZ",
90            "ethnicities": [
91                "European"
92            ],
93            "status": "preview"
94        },
95        {
96            "@id": "/human-donors/IGVFDO2400ODAV/",
97            "accession": "IGVFDO2400ODAV",
98            "ethnicities": [
99                "Asian"
100            ],
101            "status": "preview"
102        },
103        {
104            "@id": "/human-donors/IGVFDO3386RFLC/",
105            "accession": "IGVFDO3386RFLC",
106            "ethnicities": [
107                "Asian"
108            ],
109            "status": "preview"
110        },
111        {
112            "@id": "/human-donors/IGVFDO3597ROBC/",
113            "accession": "IGVFDO3597ROBC",
114            "ethnicities": [
115                "African American"
116            ],
117            "status": "preview"
118        },
119        {
120            "@id": "/human-donors/IGVFDO3846JBOD/",
121            "accession": "IGVFDO3846JBOD",
122            "ethnicities": [
123                "Indigenous in North America"
124            ],
125            "status": "preview"
126        },
127        {
128            "@id": "/human-donors/IGVFDO4013NBTV/",
129            "accession": "IGVFDO4013NBTV",
130            "ethnicities": [
131                "Asian"
132            ],
133            "status": "preview"
134        },
135        {
136            "@id": "/human-donors/IGVFDO4298RIDZ/",
137            "accession": "IGVFDO4298RIDZ",
138            "ethnicities": [
139                "Asian"
140            ],
141            "status": "preview"
142        },
143        {
144            "@id": "/human-donors/IGVFDO4788LANA/",
145            "accession": "IGVFDO4788LANA",
146            "ethnicities": [
147                "African American"
148            ],
149            "status": "preview"
150        },
151        {
152            "@id": "/human-donors/IGVFDO6018QLYY/",
153            "accession": "IGVFDO6018QLYY",
154            "ethnicities": [
155                "European"
156            ],
157            "status": "preview"
158        },
159        {
160            "@id": "/human-donors/IGVFDO6062EKSI/",
161            "accession": "IGVFDO6062EKSI",
162            "ethnicities": [
163                "Asian"
164            ],
165            "status": "preview"
166        },
167        {
168            "@id": "/human-donors/IGVFDO7009ERVZ/",
169            "accession": "IGVFDO7009ERVZ",
170            "ethnicities": [
171                "African American"
172            ],
173            "status": "preview"
174        },
175        {
176            "@id": "/human-donors/IGVFDO7241NHYB/",
177            "accession": "IGVFDO7241NHYB",
178            "ethnicities": [
179                "Indigenous in North America"
180            ],
181            "status": "preview"
182        },
183        {
184            "@id": "/human-donors/IGVFDO9909ZSMW/",
185            "accession": "IGVFDO9909ZSMW",
186            "ethnicities": [
187                "African American"
188            ],
189            "status": "preview"
190        }
191    ],
192    "file_sets": [
193        {
194            "@id": "/measurement-sets/IGVFDS9636SNGC/",
195            "accession": "IGVFDS9636SNGC",
196            "aliases": [
197                "jimmie-ye:XX11-SC1_snATAC"
198            ],
199            "file_set_type": "experimental data",
200            "lab": {
201                "title": "Jimmie Ye, UCSF"
202            },
203            "preferred_assay_title": "10x multiome",
204            "status": "preview",
205            "summary": "single-nucleus ATAC-seq (10x multiome)"
206        },
207        {
208            "@id": "/measurement-sets/IGVFDS0424WDCP/",
209            "accession": "IGVFDS0424WDCP",
210            "aliases": [
211                "jimmie-ye:XX11-SC1_snRNA"
212            ],
213            "file_set_type": "experimental data",
214            "lab": {
215                "title": "Jimmie Ye, UCSF"
216            },
217            "preferred_assay_title": "10x multiome",
218            "status": "preview",
219            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
220        },
221        {
222            "@id": "/analysis-sets/IGVFDS2484UEWN/",
223            "accession": "IGVFDS2484UEWN",
224            "aliases": [
225                "jimmie-ye:XX11-SC1-analysis-set"
226            ],
227            "file_set_type": "intermediate analysis",
228            "lab": {
229                "title": "Jimmie Ye, UCSF"
230            },
231            "status": "in progress",
232            "summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
233        }
234    ],
235    "institutional_certificates": [
236        {
237            "@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
238            "certificate_identifier": "IP115-26",
239            "controlled_access": true,
240            "data_use_limitation": "GRU",
241            "data_use_limitation_summary": "GRU",
242            "status": "in progress"
243        }
244    ],
245    "lab": {
246        "@id": "/labs/jimmie-ye/",
247        "title": "Jimmie Ye, UCSF"
248    },
249    "modifications": [],
250    "multiplexed_in": [],
251    "multiplexed_samples": [
252        {
253            "@id": "/primary-cells/IGVFSM7340MMFT/",
254            "@type": [
255                "PrimaryCell",
256                "Biosample",
257                "Sample",
258                "Item"
259            ],
260            "accession": "IGVFSM7340MMFT",
261            "donors": [
262                {
263                    "@id": "/human-donors/IGVFDO9909ZSMW/",
264                    "accession": "IGVFDO9909ZSMW",
265                    "status": "preview"
266                }
267            ],
268            "sample_terms": [
269                {
270                    "@id": "/sample-terms/CL_2000001/",
271                    "status": "released",
272                    "term_name": "peripheral blood mononuclear cell"
273                }
274            ],
275            "status": "preview",
276            "summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
277        },
278        {
279            "@id": "/primary-cells/IGVFSM7732OFVA/",
280            "@type": [
281                "PrimaryCell",
282                "Biosample",
283                "Sample",
284                "Item"
285            ],
286            "accession": "IGVFSM7732OFVA",
287            "donors": [
288                {
289                    "@id": "/human-donors/IGVFDO2357UEIZ/",
290                    "accession": "IGVFDO2357UEIZ",
291                    "status": "preview"
292                }
293            ],
294            "sample_terms": [
295                {
296                    "@id": "/sample-terms/CL_2000001/",
297                    "status": "released",
298                    "term_name": "peripheral blood mononuclear cell"
299                }
300            ],
301            "status": "preview",
302            "summary": "Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell"
303        },
304        {
305            "@id": "/primary-cells/IGVFSM4153GVKW/",
306            "@type": [
307                "PrimaryCell",
308                "Biosample",
309                "Sample",
310                "Item"
311            ],
312            "accession": "IGVFSM4153GVKW",
313            "donors": [
314                {
315                    "@id": "/human-donors/IGVFDO6062EKSI/",
316                    "accession": "IGVFDO6062EKSI",
317                    "status": "preview"
318                }
319            ],
320            "sample_terms": [
321                {
322                    "@id": "/sample-terms/CL_2000001/",
323                    "status": "released",
324                    "term_name": "peripheral blood mononuclear cell"
325                }
326            ],
327            "status": "preview",
328            "summary": "Homo sapiens (female, 22.0 years) peripheral blood mononuclear cell"
329        },
330        {
331            "@id": "/primary-cells/IGVFSM8423BTFP/",
332            "@type": [
333                "PrimaryCell",
334                "Biosample",
335                "Sample",
336                "Item"
337            ],
338            "accession": "IGVFSM8423BTFP",
339            "donors": [
340                {
341                    "@id": "/human-donors/IGVFDO2400ODAV/",
342                    "accession": "IGVFDO2400ODAV",
343                    "status": "preview"
344                }
345            ],
346            "sample_terms": [
347                {
348                    "@id": "/sample-terms/CL_2000001/",
349                    "status": "released",
350                    "term_name": "peripheral blood mononuclear cell"
351                }
352            ],
353            "status": "preview",
354            "summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell"
355        },
356        {
357            "@id": "/primary-cells/IGVFSM0796JRRF/",
358            "@type": [
359                "PrimaryCell",
360                "Biosample",
361                "Sample",
362                "Item"
363            ],
364            "accession": "IGVFSM0796JRRF",
365            "donors": [
366                {
367                    "@id": "/human-donors/IGVFDO1066JZNA/",
368                    "accession": "IGVFDO1066JZNA",
369                    "status": "preview"
370                }
371            ],
372            "sample_terms": [
373                {
374                    "@id": "/sample-terms/CL_2000001/",
375                    "status": "released",
376                    "term_name": "peripheral blood mononuclear cell"
377                }
378            ],
379            "status": "preview",
380            "summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
381        },
382        {
383            "@id": "/primary-cells/IGVFSM9950QQGY/",
384            "@type": [
385                "PrimaryCell",
386                "Biosample",
387                "Sample",
388                "Item"
389            ],
390            "accession": "IGVFSM9950QQGY",
391            "donors": [
392                {
393                    "@id": "/human-donors/IGVFDO7009ERVZ/",
394                    "accession": "IGVFDO7009ERVZ",
395                    "status": "preview"
396                }
397            ],
398            "sample_terms": [
399                {
400                    "@id": "/sample-terms/CL_2000001/",
401                    "status": "released",
402                    "term_name": "peripheral blood mononuclear cell"
403                }
404            ],
405            "status": "preview",
406            "summary": "Homo sapiens (female, 53.0 years) peripheral blood mononuclear cell"
407        },
408        {
409            "@id": "/primary-cells/IGVFSM2374UFEZ/",
410            "@type": [
411                "PrimaryCell",
412                "Biosample",
413                "Sample",
414                "Item"
415            ],
416            "accession": "IGVFSM2374UFEZ",
417            "donors": [
418                {
419                    "@id": "/human-donors/IGVFDO0091WOLC/",
420                    "accession": "IGVFDO0091WOLC",
421                    "status": "preview"
422                }
423            ],
424            "sample_terms": [
425                {
426                    "@id": "/sample-terms/CL_2000001/",
427                    "status": "released",
428                    "term_name": "peripheral blood mononuclear cell"
429                }
430            ],
431            "status": "preview",
432            "summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
433        },
434        {
435            "@id": "/primary-cells/IGVFSM5715NRSL/",
436            "@type": [
437                "PrimaryCell",
438                "Biosample",
439                "Sample",
440                "Item"
441            ],
442            "accession": "IGVFSM5715NRSL",
443            "donors": [
444                {
445                    "@id": "/human-donors/IGVFDO3386RFLC/",
446                    "accession": "IGVFDO3386RFLC",
447                    "status": "preview"
448                }
449            ],
450            "sample_terms": [
451                {
452                    "@id": "/sample-terms/CL_2000001/",
453                    "status": "released",
454                    "term_name": "peripheral blood mononuclear cell"
455                }
456            ],
457            "status": "preview",
458            "summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
459        },
460        {
461            "@id": "/primary-cells/IGVFSM3738BUDG/",
462            "@type": [
463                "PrimaryCell",
464                "Biosample",
465                "Sample",
466                "Item"
467            ],
468            "accession": "IGVFSM3738BUDG",
469            "donors": [
470                {
471                    "@id": "/human-donors/IGVFDO4788LANA/",
472                    "accession": "IGVFDO4788LANA",
473                    "status": "preview"
474                }
475            ],
476            "sample_terms": [
477                {
478                    "@id": "/sample-terms/CL_2000001/",
479                    "status": "released",
480                    "term_name": "peripheral blood mononuclear cell"
481                }
482            ],
483            "status": "preview",
484            "summary": "Homo sapiens (male, 40.0 years) peripheral blood mononuclear cell"
485        },
486        {
487            "@id": "/primary-cells/IGVFSM1866GHWK/",
488            "@type": [
489                "PrimaryCell",
490                "Biosample",
491                "Sample",
492                "Item"
493            ],
494            "accession": "IGVFSM1866GHWK",
495            "donors": [
496                {
497                    "@id": "/human-donors/IGVFDO7241NHYB/",
498                    "accession": "IGVFDO7241NHYB",
499                    "status": "preview"
500                }
501            ],
502            "sample_terms": [
503                {
504                    "@id": "/sample-terms/CL_2000001/",
505                    "status": "released",
506                    "term_name": "peripheral blood mononuclear cell"
507                }
508            ],
509            "status": "preview",
510            "summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
511        },
512        {
513            "@id": "/primary-cells/IGVFSM1725YOLR/",
514            "@type": [
515                "PrimaryCell",
516                "Biosample",
517                "Sample",
518                "Item"
519            ],
520            "accession": "IGVFSM1725YOLR",
521            "donors": [
522                {
523                    "@id": "/human-donors/IGVFDO4298RIDZ/",
524                    "accession": "IGVFDO4298RIDZ",
525                    "status": "preview"
526                }
527            ],
528            "sample_terms": [
529                {
530                    "@id": "/sample-terms/CL_2000001/",
531                    "status": "released",
532                    "term_name": "peripheral blood mononuclear cell"
533                }
534            ],
535            "status": "preview",
536            "summary": "Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell"
537        },
538        {
539            "@id": "/primary-cells/IGVFSM9020PEAT/",
540            "@type": [
541                "PrimaryCell",
542                "Biosample",
543                "Sample",
544                "Item"
545            ],
546            "accession": "IGVFSM9020PEAT",
547            "donors": [
548                {
549                    "@id": "/human-donors/IGVFDO0422WKPO/",
550                    "accession": "IGVFDO0422WKPO",
551                    "status": "preview"
552                }
553            ],
554            "sample_terms": [
555                {
556                    "@id": "/sample-terms/CL_2000001/",
557                    "status": "released",
558                    "term_name": "peripheral blood mononuclear cell"
559                }
560            ],
561            "status": "preview",
562            "summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
563        },
564        {
565            "@id": "/primary-cells/IGVFSM5920XIQS/",
566            "@type": [
567                "PrimaryCell",
568                "Biosample",
569                "Sample",
570                "Item"
571            ],
572            "accession": "IGVFSM5920XIQS",
573            "donors": [
574                {
575                    "@id": "/human-donors/IGVFDO3846JBOD/",
576                    "accession": "IGVFDO3846JBOD",
577                    "status": "preview"
578                }
579            ],
580            "sample_terms": [
581                {
582                    "@id": "/sample-terms/CL_2000001/",
583                    "status": "released",
584                    "term_name": "peripheral blood mononuclear cell"
585                }
586            ],
587            "status": "preview",
588            "summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
589        },
590        {
591            "@id": "/primary-cells/IGVFSM6697EBCH/",
592            "@type": [
593                "PrimaryCell",
594                "Biosample",
595                "Sample",
596                "Item"
597            ],
598            "accession": "IGVFSM6697EBCH",
599            "donors": [
600                {
601                    "@id": "/human-donors/IGVFDO4013NBTV/",
602                    "accession": "IGVFDO4013NBTV",
603                    "status": "preview"
604                }
605            ],
606            "sample_terms": [
607                {
608                    "@id": "/sample-terms/CL_2000001/",
609                    "status": "released",
610                    "term_name": "peripheral blood mononuclear cell"
611                }
612            ],
613            "status": "preview",
614            "summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
615        },
616        {
617            "@id": "/primary-cells/IGVFSM7573AFBK/",
618            "@type": [
619                "PrimaryCell",
620                "Biosample",
621                "Sample",
622                "Item"
623            ],
624            "accession": "IGVFSM7573AFBK",
625            "donors": [
626                {
627                    "@id": "/human-donors/IGVFDO6018QLYY/",
628                    "accession": "IGVFDO6018QLYY",
629                    "status": "preview"
630                }
631            ],
632            "sample_terms": [
633                {
634                    "@id": "/sample-terms/CL_2000001/",
635                    "status": "released",
636                    "term_name": "peripheral blood mononuclear cell"
637                }
638            ],
639            "status": "preview",
640            "summary": "Homo sapiens (female, 49.0 years) peripheral blood mononuclear cell"
641        },
642        {
643            "@id": "/primary-cells/IGVFSM3814UIWM/",
644            "@type": [
645                "PrimaryCell",
646                "Biosample",
647                "Sample",
648                "Item"
649            ],
650            "accession": "IGVFSM3814UIWM",
651            "donors": [
652                {
653                    "@id": "/human-donors/IGVFDO1278WEMK/",
654                    "accession": "IGVFDO1278WEMK",
655                    "status": "preview"
656                }
657            ],
658            "sample_terms": [
659                {
660                    "@id": "/sample-terms/CL_2000001/",
661                    "status": "released",
662                    "term_name": "peripheral blood mononuclear cell"
663                }
664            ],
665            "status": "preview",
666            "summary": "Homo sapiens (female, 22.0 years) peripheral blood mononuclear cell"
667        },
668        {
669            "@id": "/primary-cells/IGVFSM7290UYUA/",
670            "@type": [
671                "PrimaryCell",
672                "Biosample",
673                "Sample",
674                "Item"
675            ],
676            "accession": "IGVFSM7290UYUA",
677            "donors": [
678                {
679                    "@id": "/human-donors/IGVFDO1152VWOL/",
680                    "accession": "IGVFDO1152VWOL",
681                    "status": "preview"
682                }
683            ],
684            "sample_terms": [
685                {
686                    "@id": "/sample-terms/CL_2000001/",
687                    "status": "released",
688                    "term_name": "peripheral blood mononuclear cell"
689                }
690            ],
691            "status": "preview",
692            "summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
693        },
694        {
695            "@id": "/primary-cells/IGVFSM2269QJLP/",
696            "@type": [
697                "PrimaryCell",
698                "Biosample",
699                "Sample",
700                "Item"
701            ],
702            "accession": "IGVFSM2269QJLP",
703            "donors": [
704                {
705                    "@id": "/human-donors/IGVFDO1630CYUK/",
706                    "accession": "IGVFDO1630CYUK",
707                    "status": "preview"
708                }
709            ],
710            "sample_terms": [
711                {
712                    "@id": "/sample-terms/CL_2000001/",
713                    "status": "released",
714                    "term_name": "peripheral blood mononuclear cell"
715                }
716            ],
717            "status": "preview",
718            "summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
719        },
720        {
721            "@id": "/primary-cells/IGVFSM9346UBTI/",
722            "@type": [
723                "PrimaryCell",
724                "Biosample",
725                "Sample",
726                "Item"
727            ],
728            "accession": "IGVFSM9346UBTI",
729            "donors": [
730                {
731                    "@id": "/human-donors/IGVFDO3597ROBC/",
732                    "accession": "IGVFDO3597ROBC",
733                    "status": "preview"
734                }
735            ],
736            "sample_terms": [
737                {
738                    "@id": "/sample-terms/CL_2000001/",
739                    "status": "released",
740                    "term_name": "peripheral blood mononuclear cell"
741                }
742            ],
743            "status": "preview",
744            "summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
745        }
746    ],
747    "multiplexing_methods": [
748        "barcode based"
749    ],
750    "origin_of": [],
751    "sample_terms": [
752        {
753            "@id": "/sample-terms/CL_2000001/",
754            "status": "released",
755            "term_name": "peripheral blood mononuclear cell"
756        }
757    ],
758    "schema_version": "10",
759    "sorted_fractions": [],
760    "sources": [
761        {
762            "@id": "/labs/jimmie-ye/",
763            "status": "current",
764            "title": "Jimmie Ye, UCSF"
765        }
766    ],
767    "status": "preview",
768    "submitted_by": {
769        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
770        "title": "Marcus Alvarez"
771    },
772    "summary": "multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
773    "taxa": "Homo sapiens",
774    "treatments": [],
775    "uuid": "0e3ff83b-ab85-4055-b291-93727788f6d7",
776    "virtual": false
777}