{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8298WTCX/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8298WTCX",
"aliases": [
"igvf:corces_multiplexedSample_X032_G2"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2025-03-19T17:59:10.522486+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3497MBPK/",
"accession": "IGVFDO3497MBPK",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3500WGWY/",
"accession": "IGVFDO3500WGWY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5912PIZP/",
"accession": "IGVFDO5912PIZP",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7109IWDJ/",
"accession": "IGVFDO7109IWDJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7186XJLL/",
"accession": "IGVFDO7186XJLL",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7649CIGW/",
"accession": "IGVFDO7649CIGW",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7678VYKP/",
"accession": "IGVFDO7678VYKP",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7754VJKM/",
"accession": "IGVFDO7754VJKM",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8547HLIG/",
"accession": "IGVFDO8547HLIG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8584FBOT/",
"accession": "IGVFDO8584FBOT",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9462VNBA/",
"accession": "IGVFDO9462VNBA",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6899OQTS/",
"accession": "IGVFDS6899OQTS",
"aliases": [
"igvf:corces_measurementSet_X032_G2_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0346MQLV/",
"accession": "IGVFDS0346MQLV",
"aliases": [
"igvf:corces_measurementSet_X032_G2_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM1769ULWE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1769ULWE",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7186XJLL/",
"accession": "IGVFDO7186XJLL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM5089ZNFC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5089ZNFC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7678VYKP/",
"accession": "IGVFDO7678VYKP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 73 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM3338SXPN/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3338SXPN",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 80 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM2594UAVC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2594UAVC",
"donors": [
{
"@id": "/human-donors/IGVFDO7754VJKM/",
"accession": "IGVFDO7754VJKM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 89 years) posterior cingulate gyrus tissue"
},
{
"@id": "/tissues/IGVFSM9758XSIK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9758XSIK",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3500WGWY/",
"accession": "IGVFDO3500WGWY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM7309QDQX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7309QDQX",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9462VNBA/",
"accession": "IGVFDO9462VNBA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6299HIXR/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6299HIXR",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7109IWDJ/",
"accession": "IGVFDO7109IWDJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM9426KSGX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9426KSGX",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8547HLIG/",
"accession": "IGVFDO8547HLIG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 71 years) cerebellar cortex tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM0122UABU/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0122UABU",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5912PIZP/",
"accession": "IGVFDO5912PIZP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM3348GEXC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3348GEXC",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3497MBPK/",
"accession": "IGVFDO3497MBPK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 79 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6887IEIW/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6887IEIW",
"donors": [
{
"@id": "/human-donors/IGVFDO8584FBOT/",
"accession": "IGVFDO8584FBOT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 80 years) substantia nigra tissue"
},
{
"@id": "/tissues/IGVFSM0536KFDX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0536KFDX",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7649CIGW/",
"accession": "IGVFDO7649CIGW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "fc66dac2-c9d1-4795-9c76-909ed8e7a4a4",
"virtual": false
}