{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8294LIUF/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8294LIUF",
"aliases": [
"chongyuan-luo:ys3b_mux"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM8294LIUF](/multiplexed-samples/IGVFSM8294LIUF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM8294LIUF/"
}
]
},
"award": {
"@id": "/awards/HG012079/",
"component": "networks"
},
"biomarkers": [],
"classifications": [
"primary cell",
"reprogrammed cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-11-15T19:27:41.195813+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0351NYZH/",
"accession": "IGVFDO0351NYZH",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2328XGNY/",
"accession": "IGVFDO2328XGNY",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO3754NCBP/",
"accession": "IGVFDO3754NCBP",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4068JJIT/",
"accession": "IGVFDO4068JJIT",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1157ISDS/",
"accession": "IGVFDS1157ISDS",
"aliases": [
"chongyuan-luo:ys3b_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Kathrin Plath, UCLA"
},
"preferred_assay_title": "10x multiome",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS3441CZQC/",
"accession": "IGVFDS3441CZQC",
"aliases": [
"chongyuan-luo:ys3b_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Kathrin Plath, UCLA"
},
"preferred_assay_title": "10x multiome",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/18b2e0b6-edec-475b-af8a-0afc04fa43d7/",
"certificate_identifier": "IP107-02",
"controlled_access": false,
"status": "released"
}
],
"lab": {
"@id": "/labs/chongyuan-luo/",
"title": "Chongyuan Luo, UCLA"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM4178KJPJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4178KJPJ",
"donors": [
{
"@id": "/human-donors/IGVFDO3754NCBP/",
"accession": "IGVFDO3754NCBP",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days"
},
{
"@id": "/primary-cells/IGVFSM0025OPEX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0025OPEX",
"donors": [
{
"@id": "/human-donors/IGVFDO0351NYZH/",
"accession": "IGVFDO0351NYZH",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "Homo sapiens (59 years) fibroblast cell"
},
{
"@id": "/in-vitro-systems/IGVFSM2608HKRV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2608HKRV",
"donors": [
{
"@id": "/human-donors/IGVFDO2328XGNY/",
"accession": "IGVFDO2328XGNY",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day"
},
{
"@id": "/in-vitro-systems/IGVFSM6688THZN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6688THZN",
"donors": [
{
"@id": "/human-donors/IGVFDO4068JJIT/",
"accession": "IGVFDO4068JJIT",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"release_timestamp": "2025-03-27T21:33:09.345741+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/coriell/",
"status": "released",
"title": "Coriell"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
"title": "Terence Li"
},
"summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 7 days; ... and 2 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "9593012c-dde6-4034-b5d8-d204d03f2742",
"virtual": false
}