{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8276PHGD/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8276PHGD",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf6_10x3"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI1316HXBQ/",
"biomarkers": [],
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-07-22T00:26:41.069460+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS7537OHFN/",
"accession": "IGVFDS7537OHFN",
"aliases": [
"ansuman-satpathy:multiseq_igvf6_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8192PAOP/",
"accession": "IGVFDS8192PAOP",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf6_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4668AHMA/",
"accession": "IGVFDS4668AHMA",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf6_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS3232NVVG/",
"accession": "IGVFDS3232NVVG",
"aliases": [
"ansuman-satpathy:igvf6_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM5477NVJT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5477NVJT",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC cell line, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7878EBBU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7878EBBU",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 3 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1797RKIX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1797RKIX",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6746UKGY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6746UKGY",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 11 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0197UHRX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0197UHRX",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8373MXSW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8373MXSW",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4461PEQB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4461PEQB",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 32 days, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2917AFKI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2917AFKI",
"donors": [
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "H1-hESC differentiated cell specimen induced to islet of Langerhans for 32 days, male, Homo sapiens"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:12:48.507768+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/danwei-huangfu/",
"status": "current",
"title": "Danwei Huangfu, MSKCC"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "f677e2a7-582e-40aa-a68b-5ebde8bca12f",
"virtual": false
}