{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8265VEJP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8265VEJP",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf3_10x4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0286DDRD](/in-vitro-systems/IGVFSM0286DDRD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0286DDRD/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8474ROKV](/in-vitro-systems/IGVFSM8474ROKV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8474ROKV/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM3587YJXE](/in-vitro-systems/IGVFSM3587YJXE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM3587YJXE/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2897FZEW](/in-vitro-systems/IGVFSM2897FZEW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2897FZEW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2484CZCV](/in-vitro-systems/IGVFSM2484CZCV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2484CZCV/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8599ZWCC](/in-vitro-systems/IGVFSM8599ZWCC/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8599ZWCC/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2653QMYT](/in-vitro-systems/IGVFSM2653QMYT/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2653QMYT/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM8265VEJP](/multiplexed-samples/IGVFSM8265VEJP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM8265VEJP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0297HJOU](/in-vitro-systems/IGVFSM0297HJOU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0297HJOU/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9503LWJR](/in-vitro-systems/IGVFSM9503LWJR/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9503LWJR/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0169BPWH](/in-vitro-systems/IGVFSM0169BPWH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0169BPWH/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1916KSXY](/in-vitro-systems/IGVFSM1916KSXY/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1916KSXY/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2157GQQV](/in-vitro-systems/IGVFSM2157GQQV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2157GQQV/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI3959KBFR/",
"biomarkers": [],
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-07-21T23:09:21.402098+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS8466CGYE/",
"accession": "IGVFDS8466CGYE",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS0470ONXA/",
"accession": "IGVFDS0470ONXA",
"aliases": [
"ansuman-satpathy:multiseq_igvf3_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4208ZWQY/",
"accession": "IGVFDS4208ZWQY",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf3_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS9896QVZT/",
"accession": "IGVFDS9896QVZT",
"aliases": [
"ansuman-satpathy:igvf3_analysis_set_10x4"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/90b62a08-60dc-4932-8bf1-38769f07b362/",
"certificate_identifier": "IP115-06",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/eaf8c672-701d-4aee-9108-8d64c472d20e/",
"certificate_identifier": "IP115-14",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM2157GQQV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2157GQQV",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM2484CZCV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2484CZCV",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM1916KSXY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1916KSXY",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days"
},
{
"@id": "/in-vitro-systems/IGVFSM2897FZEW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2897FZEW",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days"
},
{
"@id": "/in-vitro-systems/IGVFSM2653QMYT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2653QMYT",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days"
},
{
"@id": "/in-vitro-systems/IGVFSM8474ROKV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8474ROKV",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days"
},
{
"@id": "/in-vitro-systems/IGVFSM3587YJXE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3587YJXE",
"donors": [
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
}
],
"status": "released",
"summary": "Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 8 days"
},
{
"@id": "/in-vitro-systems/IGVFSM0169BPWH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0169BPWH",
"donors": [
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
}
],
"status": "released",
"summary": "Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days"
},
{
"@id": "/in-vitro-systems/IGVFSM9503LWJR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9503LWJR",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 cell line grown in DMEM with serum"
},
{
"@id": "/in-vitro-systems/IGVFSM0297HJOU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0297HJOU",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 cell line grown in DMEM with serum"
},
{
"@id": "/in-vitro-systems/IGVFSM8599ZWCC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8599ZWCC",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 cell line grown in DMEM without serum"
},
{
"@id": "/in-vitro-systems/IGVFSM0286DDRD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0286DDRD",
"donors": [
{
"@id": "/human-donors/IGVFDO2837BRET/",
"accession": "IGVFDO2837BRET",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
}
],
"status": "released",
"summary": "Homo sapiens (male) HepG2 cell line grown in DMEM without serum"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:11:04.478964+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001187/",
"status": "released",
"term_name": "HepG2"
},
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/gary-hon/",
"status": "current",
"title": "Gary Hon, UT"
},
{
"@id": "/labs/lars-steinmetz/",
"status": "current",
"title": "Lars Steinmetz, Stanford"
},
{
"@id": "/labs/richard-sherwood/",
"status": "current",
"title": "Richard Sherwood, Brigham and Women's Hospital"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days; Homo sapiens (male) HepG2 cell line grown in DMEM without serum; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "58168e70-a287-4801-9123-24de1c9b7c85",
"virtual": false
}