HepG2 — IGVFSM8265VEJP

released
{
    "@context": "/terms/",
    "@id": "/multiplexed-samples/IGVFSM8265VEJP/",
    "@type": [
        "MultiplexedSample",
        "Sample",
        "Item"
    ],
    "accession": "IGVFSM8265VEJP",
    "aliases": [
        "ansuman-satpathy:multiplexed_sample_igvf3_10x4"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "barcode_map": "/tabular-files/IGVFFI3959KBFR/",
    "biomarkers": [],
    "classifications": [
        "cell line",
        "differentiated cell specimen",
        "multiplexed sample"
    ],
    "creation_timestamp": "2024-07-21T23:09:21.402098+00:00",
    "disease_terms": [],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1756PPKO/",
            "accession": "IGVFDO1756PPKO",
            "ethnicities": [
                "Japanese"
            ],
            "status": "released"
        },
        {
            "@id": "/human-donors/IGVFDO2718IDDQ/",
            "accession": "IGVFDO2718IDDQ",
            "status": "released"
        },
        {
            "@id": "/human-donors/IGVFDO2837BRET/",
            "accession": "IGVFDO2837BRET",
            "status": "released"
        }
    ],
    "file_sets": [
        {
            "@id": "/measurement-sets/IGVFDS8466CGYE/",
            "accession": "IGVFDS8466CGYE",
            "aliases": [
                "ansuman-satpathy:snATAC-seq_igvf3_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/auxiliary-sets/IGVFDS0470ONXA/",
            "accession": "IGVFDS0470ONXA",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf3_10x4"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/measurement-sets/IGVFDS4208ZWQY/",
            "accession": "IGVFDS4208ZWQY",
            "aliases": [
                "ansuman-satpathy:snRNA-seq_igvf3_10x4"
            ],
            "file_set_type": "experimental data",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "preferred_assay_title": "10x multiome with MULTI-seq",
            "status": "released",
            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
        },
        {
            "@id": "/analysis-sets/IGVFDS9170BNTS/",
            "accession": "IGVFDS9170BNTS",
            "aliases": [
                "ansuman-satpathy:igvf3_analysis_set"
            ],
            "file_set_type": "intermediate analysis",
            "lab": {
                "title": "Ansuman Satpathy, Stanford"
            },
            "status": "released",
            "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
        }
    ],
    "institutional_certificates": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "modifications": [],
    "multiplexed_in": [],
    "multiplexed_samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM2157GQQV/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2157GQQV",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2484CZCV/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2484CZCV",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM1916KSXY/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM1916KSXY",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2897FZEW/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2897FZEW",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM2653QMYT/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM2653QMYT",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM8474ROKV/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8474ROKV",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO1756PPKO/",
                    "accession": "IGVFDO1756PPKO",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0009747/",
                    "status": "released",
                    "term_name": "GM25256 (WTC-11)"
                }
            ],
            "status": "released",
            "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 14 days, male, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM3587YJXE/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM3587YJXE",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2718IDDQ/",
                    "accession": "IGVFDO2718IDDQ",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0003045/",
                    "status": "released",
                    "term_name": "H9"
                }
            ],
            "status": "released",
            "summary": "H9 differentiated cell specimen induced to cardiac muscle cell for 8 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0169BPWH/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0169BPWH",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2718IDDQ/",
                    "accession": "IGVFDO2718IDDQ",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0003045/",
                    "status": "released",
                    "term_name": "H9"
                }
            ],
            "status": "released",
            "summary": "H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM9503LWJR/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9503LWJR",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2837BRET/",
                    "accession": "IGVFDO2837BRET",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0001187/",
                    "status": "released",
                    "term_name": "HepG2"
                }
            ],
            "status": "released",
            "summary": "HepG2 cell line, male, Homo sapiens grown in DMEM with serum"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0297HJOU/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0297HJOU",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2837BRET/",
                    "accession": "IGVFDO2837BRET",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0001187/",
                    "status": "released",
                    "term_name": "HepG2"
                }
            ],
            "status": "released",
            "summary": "HepG2 cell line, male, Homo sapiens grown in DMEM with serum"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM8599ZWCC/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8599ZWCC",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2837BRET/",
                    "accession": "IGVFDO2837BRET",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0001187/",
                    "status": "released",
                    "term_name": "HepG2"
                }
            ],
            "status": "released",
            "summary": "HepG2 cell line, male, Homo sapiens grown in DMEM without serum"
        },
        {
            "@id": "/in-vitro-systems/IGVFSM0286DDRD/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0286DDRD",
            "donors": [
                {
                    "@id": "/human-donors/IGVFDO2837BRET/",
                    "accession": "IGVFDO2837BRET",
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/EFO_0001187/",
                    "status": "released",
                    "term_name": "HepG2"
                }
            ],
            "status": "released",
            "summary": "HepG2 cell line, male, Homo sapiens grown in DMEM without serum"
        }
    ],
    "multiplexing_methods": [
        "barcode based"
    ],
    "notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
    "origin_of": [],
    "protocols": [
        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
    ],
    "release_timestamp": "2025-03-07T01:11:04.478964+00:00",
    "sample_terms": [
        {
            "@id": "/sample-terms/EFO_0001187/",
            "status": "released",
            "term_name": "HepG2"
        },
        {
            "@id": "/sample-terms/EFO_0003045/",
            "status": "released",
            "term_name": "H9"
        },
        {
            "@id": "/sample-terms/EFO_0009747/",
            "status": "released",
            "term_name": "GM25256 (WTC-11)"
        }
    ],
    "schema_version": "10",
    "sorted_fractions": [],
    "sources": [
        {
            "@id": "/labs/gary-hon/",
            "status": "current",
            "title": "Gary Hon, UT"
        },
        {
            "@id": "/labs/lars-steinmetz/",
            "status": "current",
            "title": "Lars Steinmetz, Stanford"
        },
        {
            "@id": "/labs/richard-sherwood/",
            "status": "current",
            "title": "Richard Sherwood, Brigham and Women's Hospital"
        }
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "summary": "multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples",
    "taxa": "Homo sapiens",
    "treatments": [],
    "uuid": "58168e70-a287-4801-9123-24de1c9b7c85",
    "virtual": false
}