{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM8130GPCI/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM8130GPCI",
"aliases": [
"harinder-singh:multiplexed_scRNAseq_don1_r1"
],
"audit": {},
"award": {
"@id": "/awards/HG012041/",
"component": "networks"
},
"barcode_map": "/tabular-files/IGVFFI3895TBOX/",
"biomarkers": [],
"classifications": [
"differentiated cell specimen",
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2024-09-20T20:02:45.563368+00:00",
"description": "multiplexed sample: naive, D2, D4, and D6 in vitro-activatd B cells for scRNA-seq",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"ethnicities": [
"African American"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2610IANK/",
"accession": "IGVFDS2610IANK",
"aliases": [
"harinder-singh:Bcells_don1_scRNAseq_measurement"
],
"file_set_type": "experimental data",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"preferred_assay_title": "scRNA-seq",
"status": "preview",
"summary": "scRNA-seq"
},
{
"@id": "/analysis-sets/IGVFDS9167HYTZ/",
"accession": "IGVFDS9167HYTZ",
"aliases": [
"harinder-singh:Bcells_don1_scRNAseq_measurement_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "preview",
"summary": "scRNA-seq: filtered feature barcode matrix"
},
{
"@id": "/analysis-sets/IGVFDS8726NVTD/",
"accession": "IGVFDS8726NVTD",
"aliases": [
"harinder-singh:AnalysisSet_measurement-IGVFDS2610IANK_sc-uniform-pipeline"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "in progress",
"summary": "scRNA-seq"
},
{
"@id": "/analysis-sets/IGVFDS3787XLRV/",
"accession": "IGVFDS3787XLRV",
"aliases": [
"harinder-singh:Bcells_don1_scRNAseq_principal_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Harinder Singh, University of Pittsburgh"
},
"status": "preview",
"summary": "scRNA-seq: sparse gene count matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/4786e123-f40d-4b08-aa06-b5f35e9cc453/",
"certificate_identifier": "IP108-01",
"controlled_access": true,
"data_use_limitation": "HMB",
"data_use_limitation_summary": "HMB",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/harinder-singh/",
"title": "Harinder Singh, University of Pittsburgh"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM5472BYWV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5472BYWV",
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 33 years) B cell"
},
{
"@id": "/in-vitro-systems/IGVFSM2232NXVA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2232NXVA",
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days"
},
{
"@id": "/in-vitro-systems/IGVFSM8508IZKU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8508IZKU",
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
},
{
"@id": "/in-vitro-systems/IGVFSM7260UYQT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7260UYQT",
"donors": [
{
"@id": "/human-donors/IGVFDO9916UELD/",
"accession": "IGVFDO9916UELD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/stem-cell-technologies/",
"status": "released",
"title": "STEMCELL Technologies"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
"title": "Nicholas Pease"
},
"summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 2 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "861fee95-7347-4b21-93fc-fcb2f1a5fef9",
"virtual": false
}