{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM7382DPJV/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7382DPJV",
"aliases": [
"ali-mortazavi:subpool_012_13C"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM7382DPJV](/multiplexed-samples/IGVFSM7382DPJV/) has in progress subobject tabular file [IGVFFI7516EHMR](/tabular-files/IGVFFI7516EHMR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM7382DPJV/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7382DPJV](/multiplexed-samples/IGVFSM7382DPJV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7382DPJV/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
},
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000750/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI7516EHMR/",
"biomarkers": [],
"cellular_sub_pool": "012_13C",
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2023-10-18T23:33:46.590606+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"status": "released",
"strain": "WSB/EiJ"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"status": "released",
"strain": "WSB/EiJ"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"status": "released",
"strain": "NZO/H1LtJ"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"status": "released",
"strain": "PWK/PhJ"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"status": "released",
"strain": "AJ"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"status": "released",
"strain": "AJ"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"status": "released",
"strain": "WSB/EiJ"
},
{
"@id": "/rodent-donors/IGVFDO7658MAGX/",
"accession": "IGVFDO7658MAGX",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO7824YAWC/",
"accession": "IGVFDO7824YAWC",
"status": "released",
"strain": "C57BL/6J"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"status": "released",
"strain": "NZO/H1LtJ"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS7630FUMT/",
"accession": "IGVFDS7630FUMT",
"aliases": [
"ali-mortazavi:012_13C_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/analysis-sets/IGVFDS0314XOTU/",
"accession": "IGVFDS0314XOTU",
"aliases": [
"ali-mortazavi:igvf_012_Subpool_3_total+core"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS8997QHCM/",
"accession": "IGVFDS8997QHCM",
"aliases": [
"ali-mortazavi:founder_adrenal_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS2950ZMLN/",
"accession": "IGVFDS2950ZMLN",
"aliases": [
"ali-mortazavi:founder_cortexhippocampus_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS1666GZSV/",
"accession": "IGVFDS1666GZSV",
"aliases": [
"ali-mortazavi:founder_diencephalonpituitary_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS9423ZPAY/",
"accession": "IGVFDS9423ZPAY",
"aliases": [
"ali-mortazavi:founder_gastrocnemius_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS0868APKJ/",
"accession": "IGVFDS0868APKJ",
"aliases": [
"ali-mortazavi:founder_heart_analysis"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM9731QOVH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9731QOVH",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "Mus musculus C57BL/6J (female, 72 days) adrenal gland tissue"
},
{
"@id": "/tissues/IGVFSM4761JWVH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4761JWVH",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7824YAWC/",
"accession": "IGVFDO7824YAWC",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
}
],
"status": "released",
"summary": "Mus musculus C57BL/6J (female, 72 days) gastrocnemius tissue"
},
{
"@id": "/tissues/IGVFSM5294ZSIL/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5294ZSIL",
"donors": [
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
}
],
"status": "released",
"summary": "Mus musculus AJ (male, 69 days) heart tissue"
},
{
"@id": "/tissues/IGVFSM4608HMDV/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4608HMDV",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
}
],
"status": "released",
"summary": "Mus musculus AJ (male, 69 days) heart tissue"
},
{
"@id": "/tissues/IGVFSM8242IPDC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8242IPDC",
"donors": [
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "Mus musculus NZO/H1LtJ (male, 69 days) adrenal gland tissue"
},
{
"@id": "/tissues/IGVFSM1961UWLF/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1961UWLF",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7658MAGX/",
"accession": "IGVFDO7658MAGX",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
}
],
"status": "released",
"summary": "Mus musculus C57BL/6J (female, 70 days) gastrocnemius tissue"
},
{
"@id": "/tissues/IGVFSM1839OFVA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1839OFVA",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue"
},
{
"@id": "/tissues/IGVFSM8201XPIS/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8201XPIS",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
}
],
"status": "released",
"summary": "Mus musculus NZO/H1LtJ (female, 69 days) left hippocampal formation tissue"
},
{
"@id": "/tissues/IGVFSM3432ZCOX/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3432ZCOX",
"donors": [
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
}
],
"status": "released",
"summary": "Mus musculus WSB/EiJ (female, 69 days) heart tissue"
},
{
"@id": "/tissues/IGVFSM5120VDBH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5120VDBH",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"status": "released",
"summary": "Mus musculus PWK/PhJ (female, 69 days) adrenal gland tissue"
},
{
"@id": "/tissues/IGVFSM1456DXFQ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1456DXFQ",
"donors": [
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
}
],
"status": "released",
"summary": "Mus musculus WSB/EiJ (male, 69 days) heart tissue"
},
{
"@id": "/tissues/IGVFSM8078MQQC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8078MQQC",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
}
],
"status": "released",
"summary": "Mus musculus NZO/H1LtJ (female, 69 days) pituitary gland tissue"
},
{
"@id": "/tissues/IGVFSM2791YRHP/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2791YRHP",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
}
],
"status": "released",
"summary": "Mus musculus NZO/H1LtJ (female, 69 days) hypothalamus tissue"
},
{
"@id": "/tissues/IGVFSM3113AHHA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3113AHHA",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
}
],
"status": "released",
"summary": "Mus musculus WSB/EiJ (female, 69 days) heart tissue"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"release_timestamp": "2025-04-19T18:07:27.047774+00:00",
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
},
{
"@id": "/sample-terms/NTR_0000750/",
"status": "released",
"term_name": "left hippocampal formation"
},
{
"@id": "/sample-terms/UBERON_0000007/",
"status": "released",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000948/",
"status": "released",
"term_name": "heart"
},
{
"@id": "/sample-terms/UBERON_0001388/",
"status": "released",
"term_name": "gastrocnemius"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"status": "released",
"term_name": "hypothalamus"
},
{
"@id": "/sample-terms/UBERON_0002369/",
"status": "released",
"term_name": "adrenal gland"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"status": "released",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"summary": "multiplexed sample: Mus musculus WSB/EiJ (male, 69 days) heart tissue; Mus musculus NZO/H1LtJ (female, 69 days) left cerebral cortex tissue; ... and 12 more samples",
"taxa": "Mus musculus",
"treatments": [],
"uuid": "bf40ff8f-8812-487a-a9f2-1f1d9902b970",
"virtual": false
}