putamen — IGVFSM7243MOJZ

preview
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM7243MOJZ/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM7243MOJZ",
10    "aliases": [
11        "igvf:corces_multiplexedSample_X040_G1"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012076/",
16        "component": "mapping"
17    },
18    "biomarkers": [],
19    "classifications": [
20        "tissue",
21        "multiplexed sample"
22    ],
23    "creation_timestamp": "2025-03-19T18:01:15.165377+00:00",
24    "disease_terms": [
25        {
26            "@id": "/phenotype-terms/DOID_0080832/",
27            "status": "in progress",
28            "term_name": "mild cognitive impairment"
29        },
30        {
31            "@id": "/phenotype-terms/DOID_14330/",
32            "status": "in progress",
33            "term_name": "Parkinson's disease"
34        },
35        {
36            "@id": "/phenotype-terms/DOID_9246/",
37            "status": "in progress",
38            "term_name": "cerebral amyloid angiopathy"
39        },
40        {
41            "@id": "/phenotype-terms/MONDO_0004975/",
42            "status": "released",
43            "term_name": "Alzheimer disease"
44        }
45    ],
46    "donors": [
47        {
48            "@id": "/human-donors/IGVFDO0909BNTN/",
49            "accession": "IGVFDO0909BNTN",
50            "ethnicities": [
51                "European"
52            ],
53            "status": "preview"
54        },
55        {
56            "@id": "/human-donors/IGVFDO2045AFUW/",
57            "accession": "IGVFDO2045AFUW",
58            "ethnicities": [
59                "European"
60            ],
61            "status": "preview"
62        },
63        {
64            "@id": "/human-donors/IGVFDO2928PSUK/",
65            "accession": "IGVFDO2928PSUK",
66            "ethnicities": [
67                "European"
68            ],
69            "status": "preview"
70        },
71        {
72            "@id": "/human-donors/IGVFDO3971UIZC/",
73            "accession": "IGVFDO3971UIZC",
74            "ethnicities": [
75                "European"
76            ],
77            "status": "preview"
78        },
79        {
80            "@id": "/human-donors/IGVFDO4053HEKW/",
81            "accession": "IGVFDO4053HEKW",
82            "ethnicities": [
83                "European"
84            ],
85            "status": "preview"
86        },
87        {
88            "@id": "/human-donors/IGVFDO4103FHPT/",
89            "accession": "IGVFDO4103FHPT",
90            "ethnicities": [
91                "European"
92            ],
93            "status": "preview"
94        },
95        {
96            "@id": "/human-donors/IGVFDO4108VCBA/",
97            "accession": "IGVFDO4108VCBA",
98            "ethnicities": [
99                "European"
100            ],
101            "status": "preview"
102        },
103        {
104            "@id": "/human-donors/IGVFDO4191KJBR/",
105            "accession": "IGVFDO4191KJBR",
106            "ethnicities": [
107                "European"
108            ],
109            "status": "preview"
110        },
111        {
112            "@id": "/human-donors/IGVFDO5912PIZP/",
113            "accession": "IGVFDO5912PIZP",
114            "ethnicities": [
115                "European"
116            ],
117            "status": "preview"
118        },
119        {
120            "@id": "/human-donors/IGVFDO7095OCLJ/",
121            "accession": "IGVFDO7095OCLJ",
122            "ethnicities": [
123                "European"
124            ],
125            "status": "preview"
126        },
127        {
128            "@id": "/human-donors/IGVFDO7754VJKM/",
129            "accession": "IGVFDO7754VJKM",
130            "ethnicities": [
131                "European"
132            ],
133            "status": "preview"
134        },
135        {
136            "@id": "/human-donors/IGVFDO8670MHXE/",
137            "accession": "IGVFDO8670MHXE",
138            "ethnicities": [
139                "European"
140            ],
141            "status": "preview"
142        }
143    ],
144    "file_sets": [
145        {
146            "@id": "/measurement-sets/IGVFDS5414UFNC/",
147            "accession": "IGVFDS5414UFNC",
148            "aliases": [
149                "igvf:corces_measurementSet_X040_G1_ATAC"
150            ],
151            "file_set_type": "experimental data",
152            "lab": {
153                "title": "Ryan Corces, Gladstone Institute UCSF"
154            },
155            "preferred_assay_title": "10x multiome",
156            "status": "preview",
157            "summary": "single-nucleus ATAC-seq (10x multiome)"
158        },
159        {
160            "@id": "/measurement-sets/IGVFDS2806EVXQ/",
161            "accession": "IGVFDS2806EVXQ",
162            "aliases": [
163                "igvf:corces_measurementSet_X040_G1_RNA"
164            ],
165            "file_set_type": "experimental data",
166            "lab": {
167                "title": "Ryan Corces, Gladstone Institute UCSF"
168            },
169            "preferred_assay_title": "10x multiome",
170            "status": "preview",
171            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
172        }
173    ],
174    "institutional_certificates": [
175        {
176            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
177            "certificate_identifier": "IP115-05",
178            "controlled_access": false,
179            "status": "in progress"
180        }
181    ],
182    "lab": {
183        "@id": "/labs/ryan-corces/",
184        "title": "Ryan Corces, Gladstone Institute UCSF"
185    },
186    "modifications": [],
187    "multiplexed_in": [],
188    "multiplexed_samples": [
189        {
190            "@id": "/tissues/IGVFSM9425DRXU/",
191            "@type": [
192                "Tissue",
193                "Biosample",
194                "Sample",
195                "Item"
196            ],
197            "accession": "IGVFSM9425DRXU",
198            "disease_terms": [
199                {
200                    "@id": "/phenotype-terms/MONDO_0004975/",
201                    "status": "released",
202                    "term_name": "Alzheimer disease"
203                },
204                {
205                    "@id": "/phenotype-terms/DOID_14330/",
206                    "status": "in progress",
207                    "term_name": "Parkinson's disease"
208                },
209                {
210                    "@id": "/phenotype-terms/DOID_9246/",
211                    "status": "in progress",
212                    "term_name": "cerebral amyloid angiopathy"
213                }
214            ],
215            "donors": [
216                {
217                    "@id": "/human-donors/IGVFDO4191KJBR/",
218                    "accession": "IGVFDO4191KJBR",
219                    "status": "preview"
220                }
221            ],
222            "sample_terms": [
223                {
224                    "@id": "/sample-terms/UBERON_0001874/",
225                    "status": "preview",
226                    "term_name": "putamen"
227                }
228            ],
229            "status": "preview",
230            "summary": "Homo sapiens (male, 80 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy"
231        },
232        {
233            "@id": "/tissues/IGVFSM9308VHFW/",
234            "@type": [
235                "Tissue",
236                "Biosample",
237                "Sample",
238                "Item"
239            ],
240            "accession": "IGVFSM9308VHFW",
241            "disease_terms": [
242                {
243                    "@id": "/phenotype-terms/DOID_14330/",
244                    "status": "in progress",
245                    "term_name": "Parkinson's disease"
246                }
247            ],
248            "donors": [
249                {
250                    "@id": "/human-donors/IGVFDO3971UIZC/",
251                    "accession": "IGVFDO3971UIZC",
252                    "status": "preview"
253                }
254            ],
255            "sample_terms": [
256                {
257                    "@id": "/sample-terms/UBERON_0001874/",
258                    "status": "preview",
259                    "term_name": "putamen"
260                }
261            ],
262            "status": "preview",
263            "summary": "Homo sapiens (female, 82 years) putamen tissue associated with Parkinson's disease"
264        },
265        {
266            "@id": "/tissues/IGVFSM8850QXUW/",
267            "@type": [
268                "Tissue",
269                "Biosample",
270                "Sample",
271                "Item"
272            ],
273            "accession": "IGVFSM8850QXUW",
274            "disease_terms": [
275                {
276                    "@id": "/phenotype-terms/DOID_14330/",
277                    "status": "in progress",
278                    "term_name": "Parkinson's disease"
279                }
280            ],
281            "donors": [
282                {
283                    "@id": "/human-donors/IGVFDO0909BNTN/",
284                    "accession": "IGVFDO0909BNTN",
285                    "status": "preview"
286                }
287            ],
288            "sample_terms": [
289                {
290                    "@id": "/sample-terms/UBERON_0001874/",
291                    "status": "preview",
292                    "term_name": "putamen"
293                }
294            ],
295            "status": "preview",
296            "summary": "Homo sapiens (male, 85 years) putamen tissue associated with Parkinson's disease"
297        },
298        {
299            "@id": "/tissues/IGVFSM0898YBHT/",
300            "@type": [
301                "Tissue",
302                "Biosample",
303                "Sample",
304                "Item"
305            ],
306            "accession": "IGVFSM0898YBHT",
307            "disease_terms": [
308                {
309                    "@id": "/phenotype-terms/DOID_14330/",
310                    "status": "in progress",
311                    "term_name": "Parkinson's disease"
312                }
313            ],
314            "donors": [
315                {
316                    "@id": "/human-donors/IGVFDO4108VCBA/",
317                    "accession": "IGVFDO4108VCBA",
318                    "status": "preview"
319                }
320            ],
321            "sample_terms": [
322                {
323                    "@id": "/sample-terms/UBERON_0002740/",
324                    "status": "preview",
325                    "term_name": "posterior cingulate gyrus"
326                }
327            ],
328            "status": "preview",
329            "summary": "Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease"
330        },
331        {
332            "@id": "/tissues/IGVFSM3534SCRZ/",
333            "@type": [
334                "Tissue",
335                "Biosample",
336                "Sample",
337                "Item"
338            ],
339            "accession": "IGVFSM3534SCRZ",
340            "donors": [
341                {
342                    "@id": "/human-donors/IGVFDO2928PSUK/",
343                    "accession": "IGVFDO2928PSUK",
344                    "status": "preview"
345                }
346            ],
347            "sample_terms": [
348                {
349                    "@id": "/sample-terms/UBERON_0002740/",
350                    "status": "preview",
351                    "term_name": "posterior cingulate gyrus"
352                }
353            ],
354            "status": "preview",
355            "summary": "Homo sapiens (male, 53 years) posterior cingulate gyrus tissue"
356        },
357        {
358            "@id": "/tissues/IGVFSM3075UOAM/",
359            "@type": [
360                "Tissue",
361                "Biosample",
362                "Sample",
363                "Item"
364            ],
365            "accession": "IGVFSM3075UOAM",
366            "disease_terms": [
367                {
368                    "@id": "/phenotype-terms/DOID_14330/",
369                    "status": "in progress",
370                    "term_name": "Parkinson's disease"
371                },
372                {
373                    "@id": "/phenotype-terms/DOID_9246/",
374                    "status": "in progress",
375                    "term_name": "cerebral amyloid angiopathy"
376                },
377                {
378                    "@id": "/phenotype-terms/DOID_0080832/",
379                    "status": "in progress",
380                    "term_name": "mild cognitive impairment"
381                }
382            ],
383            "donors": [
384                {
385                    "@id": "/human-donors/IGVFDO2045AFUW/",
386                    "accession": "IGVFDO2045AFUW",
387                    "status": "preview"
388                }
389            ],
390            "sample_terms": [
391                {
392                    "@id": "/sample-terms/UBERON_0002740/",
393                    "status": "preview",
394                    "term_name": "posterior cingulate gyrus"
395                }
396            ],
397            "status": "preview",
398            "summary": "Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
399        },
400        {
401            "@id": "/tissues/IGVFSM7791PXEE/",
402            "@type": [
403                "Tissue",
404                "Biosample",
405                "Sample",
406                "Item"
407            ],
408            "accession": "IGVFSM7791PXEE",
409            "donors": [
410                {
411                    "@id": "/human-donors/IGVFDO7754VJKM/",
412                    "accession": "IGVFDO7754VJKM",
413                    "status": "preview"
414                }
415            ],
416            "sample_terms": [
417                {
418                    "@id": "/sample-terms/UBERON_0002771/",
419                    "status": "preview",
420                    "term_name": "middle temporal gyrus"
421                }
422            ],
423            "status": "preview",
424            "summary": "Homo sapiens (male, 89 years) middle temporal gyrus tissue"
425        },
426        {
427            "@id": "/tissues/IGVFSM2331UAPP/",
428            "@type": [
429                "Tissue",
430                "Biosample",
431                "Sample",
432                "Item"
433            ],
434            "accession": "IGVFSM2331UAPP",
435            "disease_terms": [
436                {
437                    "@id": "/phenotype-terms/DOID_14330/",
438                    "status": "in progress",
439                    "term_name": "Parkinson's disease"
440                },
441                {
442                    "@id": "/phenotype-terms/DOID_9246/",
443                    "status": "in progress",
444                    "term_name": "cerebral amyloid angiopathy"
445                }
446            ],
447            "donors": [
448                {
449                    "@id": "/human-donors/IGVFDO8670MHXE/",
450                    "accession": "IGVFDO8670MHXE",
451                    "status": "preview"
452                }
453            ],
454            "sample_terms": [
455                {
456                    "@id": "/sample-terms/UBERON_0002771/",
457                    "status": "preview",
458                    "term_name": "middle temporal gyrus"
459                }
460            ],
461            "status": "preview",
462            "summary": "Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
463        },
464        {
465            "@id": "/tissues/IGVFSM9292YPAO/",
466            "@type": [
467                "Tissue",
468                "Biosample",
469                "Sample",
470                "Item"
471            ],
472            "accession": "IGVFSM9292YPAO",
473            "disease_terms": [
474                {
475                    "@id": "/phenotype-terms/DOID_14330/",
476                    "status": "in progress",
477                    "term_name": "Parkinson's disease"
478                }
479            ],
480            "donors": [
481                {
482                    "@id": "/human-donors/IGVFDO4053HEKW/",
483                    "accession": "IGVFDO4053HEKW",
484                    "status": "preview"
485                }
486            ],
487            "sample_terms": [
488                {
489                    "@id": "/sample-terms/UBERON_0002771/",
490                    "status": "preview",
491                    "term_name": "middle temporal gyrus"
492                }
493            ],
494            "status": "preview",
495            "summary": "Homo sapiens (male, 83 years) middle temporal gyrus tissue associated with Parkinson's disease"
496        },
497        {
498            "@id": "/tissues/IGVFSM1879JDBN/",
499            "@type": [
500                "Tissue",
501                "Biosample",
502                "Sample",
503                "Item"
504            ],
505            "accession": "IGVFSM1879JDBN",
506            "donors": [
507                {
508                    "@id": "/human-donors/IGVFDO4103FHPT/",
509                    "accession": "IGVFDO4103FHPT",
510                    "status": "preview"
511                }
512            ],
513            "sample_terms": [
514                {
515                    "@id": "/sample-terms/UBERON_0002129/",
516                    "status": "preview",
517                    "term_name": "cerebellar cortex"
518                }
519            ],
520            "status": "preview",
521            "summary": "Homo sapiens (male, 81 years) cerebellar cortex tissue"
522        },
523        {
524            "@id": "/tissues/IGVFSM5929LQLI/",
525            "@type": [
526                "Tissue",
527                "Biosample",
528                "Sample",
529                "Item"
530            ],
531            "accession": "IGVFSM5929LQLI",
532            "disease_terms": [
533                {
534                    "@id": "/phenotype-terms/DOID_14330/",
535                    "status": "in progress",
536                    "term_name": "Parkinson's disease"
537                },
538                {
539                    "@id": "/phenotype-terms/DOID_9246/",
540                    "status": "in progress",
541                    "term_name": "cerebral amyloid angiopathy"
542                }
543            ],
544            "donors": [
545                {
546                    "@id": "/human-donors/IGVFDO7095OCLJ/",
547                    "accession": "IGVFDO7095OCLJ",
548                    "status": "preview"
549                }
550            ],
551            "sample_terms": [
552                {
553                    "@id": "/sample-terms/UBERON_0002129/",
554                    "status": "preview",
555                    "term_name": "cerebellar cortex"
556                }
557            ],
558            "status": "preview",
559            "summary": "Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
560        },
561        {
562            "@id": "/tissues/IGVFSM0084YLGH/",
563            "@type": [
564                "Tissue",
565                "Biosample",
566                "Sample",
567                "Item"
568            ],
569            "accession": "IGVFSM0084YLGH",
570            "disease_terms": [
571                {
572                    "@id": "/phenotype-terms/DOID_14330/",
573                    "status": "in progress",
574                    "term_name": "Parkinson's disease"
575                },
576                {
577                    "@id": "/phenotype-terms/DOID_9246/",
578                    "status": "in progress",
579                    "term_name": "cerebral amyloid angiopathy"
580                },
581                {
582                    "@id": "/phenotype-terms/DOID_0080832/",
583                    "status": "in progress",
584                    "term_name": "mild cognitive impairment"
585                }
586            ],
587            "donors": [
588                {
589                    "@id": "/human-donors/IGVFDO5912PIZP/",
590                    "accession": "IGVFDO5912PIZP",
591                    "status": "preview"
592                }
593            ],
594            "sample_terms": [
595                {
596                    "@id": "/sample-terms/UBERON_0002038/",
597                    "status": "preview",
598                    "term_name": "substantia nigra"
599                }
600            ],
601            "status": "preview",
602            "summary": "Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
603        }
604    ],
605    "multiplexing_methods": [
606        "genetic"
607    ],
608    "origin_of": [],
609    "sample_terms": [
610        {
611            "@id": "/sample-terms/UBERON_0001874/",
612            "status": "preview",
613            "term_name": "putamen"
614        },
615        {
616            "@id": "/sample-terms/UBERON_0002038/",
617            "status": "preview",
618            "term_name": "substantia nigra"
619        },
620        {
621            "@id": "/sample-terms/UBERON_0002129/",
622            "status": "preview",
623            "term_name": "cerebellar cortex"
624        },
625        {
626            "@id": "/sample-terms/UBERON_0002740/",
627            "status": "preview",
628            "term_name": "posterior cingulate gyrus"
629        },
630        {
631            "@id": "/sample-terms/UBERON_0002771/",
632            "status": "preview",
633            "term_name": "middle temporal gyrus"
634        }
635    ],
636    "schema_version": "10",
637    "sorted_fractions": [],
638    "sources": [
639        {
640            "@id": "/sources/banner-health/",
641            "status": "released",
642            "title": "Banner Health"
643        }
644    ],
645    "status": "preview",
646    "submitted_by": {
647        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
648        "title": "Ryan Corces"
649    },
650    "summary": "multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples",
651    "taxa": "Homo sapiens",
652    "treatments": [],
653    "uuid": "326d9f15-a83f-48f2-bd59-ca2a16883501",
654    "virtual": false
655}