{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM7106DAZZ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7106DAZZ",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf13_10x2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Tissue [IGVFSM3483SRQC](/tissues/IGVFSM3483SRQC/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM3483SRQC/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM3483SRQC](/tissues/IGVFSM3483SRQC/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM3483SRQC/"
},
{
"category": "missing publication",
"detail": "Tissue [IGVFSM2312KETM](/tissues/IGVFSM2312KETM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM2312KETM/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM2312KETM](/tissues/IGVFSM2312KETM/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM2312KETM/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM7106DAZZ](/multiplexed-samples/IGVFSM7106DAZZ/) has in progress subobject tabular file [IGVFFI7218IPWP](/tabular-files/IGVFFI7218IPWP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM7106DAZZ/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7106DAZZ](/multiplexed-samples/IGVFSM7106DAZZ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7106DAZZ/"
},
{
"category": "missing publication",
"detail": "Tissue [IGVFSM6809PNLH](/tissues/IGVFSM6809PNLH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM6809PNLH/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM6809PNLH](/tissues/IGVFSM6809PNLH/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM6809PNLH/"
},
{
"category": "missing publication",
"detail": "Tissue [IGVFSM6166UEOE](/tissues/IGVFSM6166UEOE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/tissues/IGVFSM6166UEOE/"
},
{
"category": "missing CCF ID",
"detail": "Tissue [IGVFSM6166UEOE](/tissues/IGVFSM6166UEOE/) is missing a `ccf_id`. Human tissues are expected to specify a common coordinate framework identifier (CCF ID).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_tissue_ccf_id",
"path": "/tissues/IGVFSM6166UEOE/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI7218IPWP/",
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2024-07-23T20:58:35.406083+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1255NCVH/",
"accession": "IGVFDO1255NCVH",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2120EMSK/",
"accession": "IGVFDO2120EMSK",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4204VAPA/",
"accession": "IGVFDO4204VAPA",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4556QZMA/",
"accession": "IGVFDO4556QZMA",
"ethnicities": [
"Japanese"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS2143LCWD/",
"accession": "IGVFDS2143LCWD",
"aliases": [
"ansuman-satpathy:multiseq_igvf13_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8398CKNT/",
"accession": "IGVFDS8398CKNT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf13_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4493CHDR/",
"accession": "IGVFDS4493CHDR",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf13_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS0226SGHL/",
"accession": "IGVFDS0226SGHL",
"aliases": [
"ansuman-satpathy:igvf13_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1779b95c-3032-475b-8d7a-c607a2e42d32/",
"certificate_identifier": "IP115-09",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_modifiers": [
"PUB"
],
"data_use_limitation_summary": "GRU-PUB",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM6809PNLH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6809PNLH",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2120EMSK/",
"accession": "IGVFDO2120EMSK",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"status": "released",
"summary": "Homo sapiens (male, 57 years) left coronary artery tissue associated with coronary artery disorder"
},
{
"@id": "/tissues/IGVFSM3483SRQC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3483SRQC",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1255NCVH/",
"accession": "IGVFDO1255NCVH",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"status": "released",
"summary": "Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder"
},
{
"@id": "/tissues/IGVFSM2312KETM/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2312KETM",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4204VAPA/",
"accession": "IGVFDO4204VAPA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"status": "released",
"summary": "Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder"
},
{
"@id": "/tissues/IGVFSM6166UEOE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6166UEOE",
"disease_terms": [
{
"@id": "/phenotype-terms/MONDO_0005010/",
"status": "released",
"term_name": "coronary artery disorder"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4556QZMA/",
"accession": "IGVFDO4556QZMA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"status": "released",
"summary": "Homo sapiens (male, 69 years) left coronary artery tissue associated with coronary artery disorder"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-22T00:40:12.862214+00:00",
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001626/",
"status": "released",
"term_name": "left coronary artery"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/thomas-quertermous/",
"status": "current",
"title": "Thomas Quertermous, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "af7c2111-d5d8-4276-bf78-1859ca1d6b1a",
"virtual": false
}