{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM6958ESMJ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6958ESMJ",
"aliases": [
"ali-mortazavi:subpool_b01_13e"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000646/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI5136UFZR/",
"biomarkers": [],
"cellular_sub_pool": "B01_13E",
"classifications": [
"multiplexed sample"
],
"construct_library_sets": [],
"creation_timestamp": "2023-08-25T17:25:09.889215+00:00",
"disease_terms": [],
"donors": [
"/rodent-donors/IGVFDO0493VGMC/",
"/rodent-donors/IGVFDO1486RZJK/",
"/rodent-donors/IGVFDO3261YWHI/",
"/rodent-donors/IGVFDO4816HOFW/",
"/rodent-donors/IGVFDO6942KQBN/",
"/rodent-donors/IGVFDO7361LABA/",
"/rodent-donors/IGVFDO8652OFEQ/",
"/rodent-donors/IGVFDO9333ACQP/"
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4330PMAC/",
"accession": "IGVFDS4330PMAC",
"aliases": [
"ali-mortazavi:B01_13E_illumina"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"preferred_assay_title": "Parse SPLiT-seq",
"status": "released",
"summary": "Parse SPLiT-seq"
},
{
"@id": "/curated-sets/IGVFDS9339IZIB/",
"accession": "IGVFDS9339IZIB",
"file_set_type": "barcodes",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Mus musculus barcodes"
},
{
"@id": "/analysis-sets/IGVFDS2762DTQI/",
"accession": "IGVFDS2762DTQI",
"aliases": [
"ali-mortazavi:IGVF_B01_subpool_5"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
},
{
"@id": "/analysis-sets/IGVFDS4883TFKC/",
"accession": "IGVFDS4883TFKC",
"aliases": [
"ali-mortazavi:IGVF_B01_LeftCortex"
],
"file_set_type": "principal analysis",
"lab": {
"title": "Ali Mortazavi, UCI"
},
"status": "released",
"summary": "Parse SPLiT-seq: sparse gene count matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM7772DGMA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7772DGMA",
"donors": [
{
"@id": "/rodent-donors/IGVFDO7361LABA/",
"accession": "IGVFDO7361LABA"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)"
},
{
"@id": "/tissues/IGVFSM2279TQMZ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2279TQMZ",
"donors": [
{
"@id": "/rodent-donors/IGVFDO6942KQBN/",
"accession": "IGVFDO6942KQBN"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)"
},
{
"@id": "/tissues/IGVFSM3421UUOE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3421UUOE",
"donors": [
{
"@id": "/rodent-donors/IGVFDO8652OFEQ/",
"accession": "IGVFDO8652OFEQ"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)"
},
{
"@id": "/tissues/IGVFSM6969SYOD/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6969SYOD",
"donors": [
{
"@id": "/rodent-donors/IGVFDO1486RZJK/",
"accession": "IGVFDO1486RZJK"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)"
},
{
"@id": "/tissues/IGVFSM7094ZNGP/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7094ZNGP",
"donors": [
{
"@id": "/rodent-donors/IGVFDO9333ACQP/",
"accession": "IGVFDO9333ACQP"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)"
},
{
"@id": "/tissues/IGVFSM5782OIYL/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5782OIYL",
"donors": [
{
"@id": "/rodent-donors/IGVFDO3261YWHI/",
"accession": "IGVFDO3261YWHI"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)"
},
{
"@id": "/tissues/IGVFSM0447EABS/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0447EABS",
"donors": [
{
"@id": "/rodent-donors/IGVFDO0493VGMC/",
"accession": "IGVFDO0493VGMC"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)"
},
{
"@id": "/tissues/IGVFSM5157GFSA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5157GFSA",
"donors": [
{
"@id": "/rodent-donors/IGVFDO4816HOFW/",
"accession": "IGVFDO4816HOFW"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"release_timestamp": "2024-05-08T23:38:40.555026+00:00",
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"term_name": "left cerebral cortex"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/jackson-labs/",
"title": "The Jackson Laboratory"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"taxa": "Mus musculus",
"treatments": [],
"uuid": "92fcc1a8-9170-4a7c-90f8-5ec339a987d1",
"virtual": false
}