{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM6883HPJP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6883HPJP",
"aliases": [
"igvf:corces_multiplexedSample_RP016_G5"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2025-03-19T18:10:06.466118+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0180JQCL/",
"accession": "IGVFDO0180JQCL",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0909BNTN/",
"accession": "IGVFDO0909BNTN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4170HAEN/",
"accession": "IGVFDO4170HAEN",
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5194SXHC/",
"accession": "IGVFDO5194SXHC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5228HTJC/",
"accession": "IGVFDO5228HTJC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5912PIZP/",
"accession": "IGVFDO5912PIZP",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5949WFOO/",
"accession": "IGVFDO5949WFOO",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7754VJKM/",
"accession": "IGVFDO7754VJKM",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8458OKEW/",
"accession": "IGVFDO8458OKEW",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8670MHXE/",
"accession": "IGVFDO8670MHXE",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9028PIDF/",
"accession": "IGVFDO9028PIDF",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9299YLNH/",
"accession": "IGVFDO9299YLNH",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1789AOJS/",
"accession": "IGVFDS1789AOJS",
"aliases": [
"igvf:corces_measurementSet_RP016_G1_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0654UBEH/",
"accession": "IGVFDS0654UBEH",
"aliases": [
"igvf:corces_measurementSet_RP016_G1_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM1058EAHC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1058EAHC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5194SXHC/",
"accession": "IGVFDO5194SXHC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM1859DHNW/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1859DHNW",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9299YLNH/",
"accession": "IGVFDO9299YLNH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 82 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM0551SZOC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0551SZOC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5949WFOO/",
"accession": "IGVFDO5949WFOO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM6254KJOT/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6254KJOT",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5228HTJC/",
"accession": "IGVFDO5228HTJC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 86 years) posterior cingulate gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM4646JWIK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4646JWIK",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4170HAEN/",
"accession": "IGVFDO4170HAEN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 72 years) posterior cingulate gyrus tissue associated with cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM7791PXEE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7791PXEE",
"donors": [
{
"@id": "/human-donors/IGVFDO7754VJKM/",
"accession": "IGVFDO7754VJKM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 89 years) middle temporal gyrus tissue"
},
{
"@id": "/tissues/IGVFSM2331UAPP/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2331UAPP",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8670MHXE/",
"accession": "IGVFDO8670MHXE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM2508CHNV/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2508CHNV",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0180JQCL/",
"accession": "IGVFDO0180JQCL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 88 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM3385YKOJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3385YKOJ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO0909BNTN/",
"accession": "IGVFDO0909BNTN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM8290UTID/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8290UTID",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8458OKEW/",
"accession": "IGVFDO8458OKEW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 78 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM0242FLJC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0242FLJC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO9028PIDF/",
"accession": "IGVFDO9028PIDF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM0084YLGH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0084YLGH",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO5912PIZP/",
"accession": "IGVFDO5912PIZP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "8261553f-0a4e-4fc9-b64b-8b0e18d23934",
"virtual": false
}