{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM6345RLEH/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6345RLEH",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf17_10x3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6846CRMN](/in-vitro-systems/IGVFSM6846CRMN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6846CRMN/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM6345RLEH](/multiplexed-samples/IGVFSM6345RLEH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM6345RLEH/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2839SOTP](/in-vitro-systems/IGVFSM2839SOTP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2839SOTP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6906WEMB](/in-vitro-systems/IGVFSM6906WEMB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6906WEMB/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0076MDTS](/in-vitro-systems/IGVFSM0076MDTS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0076MDTS/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5241IMRP](/in-vitro-systems/IGVFSM5241IMRP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5241IMRP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2091KEPO](/in-vitro-systems/IGVFSM2091KEPO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2091KEPO/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7387CQPA](/in-vitro-systems/IGVFSM7387CQPA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7387CQPA/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8080AMZS](/in-vitro-systems/IGVFSM8080AMZS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8080AMZS/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0203USTG](/in-vitro-systems/IGVFSM0203USTG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0203USTG/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4994HEBE](/in-vitro-systems/IGVFSM4994HEBE/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4994HEBE/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9008PYYP](/in-vitro-systems/IGVFSM9008PYYP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9008PYYP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8521AYSS](/in-vitro-systems/IGVFSM8521AYSS/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8521AYSS/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI8290RCZJ/",
"biomarkers": [],
"cellular_sub_pool": "3",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2025-01-27T22:54:46.876246+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1850HDEG/",
"accession": "IGVFDS1850HDEG",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf17_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS7632NJZU/",
"accession": "IGVFDS7632NJZU",
"aliases": [
"ansuman-satpathy:multiseq_igvf17_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2170OFES/",
"accession": "IGVFDS2170OFES",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf17_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS3457PPSX/",
"accession": "IGVFDS3457PPSX",
"aliases": [
"ansuman-satpathy:igvf17_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/49ea766d-c6ef-4ced-be8c-4e3ba1693d31/",
"certificate_identifier": "IP115-24",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM8521AYSS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8521AYSS",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM7387CQPA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7387CQPA",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM0203USTG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0203USTG",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day"
},
{
"@id": "/in-vitro-systems/IGVFSM8080AMZS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8080AMZS",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day"
},
{
"@id": "/in-vitro-systems/IGVFSM0076MDTS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0076MDTS",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days"
},
{
"@id": "/in-vitro-systems/IGVFSM6846CRMN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6846CRMN",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days"
},
{
"@id": "/in-vitro-systems/IGVFSM4994HEBE/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4994HEBE",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 3 days"
},
{
"@id": "/in-vitro-systems/IGVFSM2839SOTP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2839SOTP",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 3 days"
},
{
"@id": "/in-vitro-systems/IGVFSM2091KEPO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2091KEPO",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 4 days"
},
{
"@id": "/in-vitro-systems/IGVFSM6906WEMB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6906WEMB",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 4 days"
},
{
"@id": "/in-vitro-systems/IGVFSM9008PYYP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9008PYYP",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 5 days"
},
{
"@id": "/in-vitro-systems/IGVFSM5241IMRP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5241IMRP",
"donors": [
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 5 days"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:16:53.942778+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jay-shendure/",
"status": "current",
"title": "Jay Shendure, UW"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "3b749d36-34a4-46e5-9a29-b1b009f1fa11",
"virtual": false
}