{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6160ZDRZ",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf11_10x3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2119NMNM](/in-vitro-systems/IGVFSM2119NMNM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2119NMNM/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1566TOGF](/in-vitro-systems/IGVFSM1566TOGF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1566TOGF/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5204GCFW](/in-vitro-systems/IGVFSM5204GCFW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5204GCFW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1618TGKO](/in-vitro-systems/IGVFSM1618TGKO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1618TGKO/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM6160ZDRZ](/multiplexed-samples/IGVFSM6160ZDRZ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM6160ZDRZ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5009IVSV](/in-vitro-systems/IGVFSM5009IVSV/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5009IVSV/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5676UPWP](/in-vitro-systems/IGVFSM5676UPWP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5676UPWP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6224RHBU](/in-vitro-systems/IGVFSM6224RHBU/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6224RHBU/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1645BPQG](/in-vitro-systems/IGVFSM1645BPQG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1645BPQG/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4287DTSZ](/in-vitro-systems/IGVFSM4287DTSZ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4287DTSZ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8329JHCA](/in-vitro-systems/IGVFSM8329JHCA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8329JHCA/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1531SWBO](/in-vitro-systems/IGVFSM1531SWBO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1531SWBO/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM0559JRRP](/in-vitro-systems/IGVFSM0559JRRP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM0559JRRP/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI6668LBRC/",
"biomarkers": [],
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-07-22T00:31:13.935032+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"ethnicities": [
"Japanese"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7411YYYE/",
"accession": "IGVFDO7411YYYE",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS2891PUQE/",
"accession": "IGVFDS2891PUQE",
"aliases": [
"ansuman-satpathy:multiseq_igvf11_10x3"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS8553CHBZ/",
"accession": "IGVFDS8553CHBZ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf11_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS4853JTJJ/",
"accession": "IGVFDS4853JTJJ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf11_10x3"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS7903FOXV/",
"accession": "IGVFDS7903FOXV",
"aliases": [
"ansuman-satpathy:igvf11_analysis_set_10x3"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
"certificate_identifier": "IP115-21",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/f37dfa73-f4f1-4bfe-a312-9eade62d5988/",
"certificate_identifier": "IP115-15",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM5009IVSV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5009IVSV",
"donors": [
{
"@id": "/human-donors/IGVFDO7411YYYE/",
"accession": "IGVFDO7411YYYE",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (female) H7-hESC differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM0559JRRP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0559JRRP",
"donors": [
{
"@id": "/human-donors/IGVFDO7411YYYE/",
"accession": "IGVFDO7411YYYE",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (female) H7-hESC differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM2119NMNM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2119NMNM",
"donors": [
{
"@id": "/human-donors/IGVFDO7411YYYE/",
"accession": "IGVFDO7411YYYE",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (female) H7-hESC differentiated cell specimen induced to cardiac muscle cell for 15 days"
},
{
"@id": "/in-vitro-systems/IGVFSM1566TOGF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1566TOGF",
"donors": [
{
"@id": "/human-donors/IGVFDO7411YYYE/",
"accession": "IGVFDO7411YYYE",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
}
],
"status": "released",
"summary": "Homo sapiens (female) H7-hESC differentiated cell specimen induced to cardiac muscle cell for 15 days"
},
{
"@id": "/in-vitro-systems/IGVFSM1645BPQG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1645BPQG",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 2 days"
},
{
"@id": "/in-vitro-systems/IGVFSM8329JHCA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8329JHCA",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 4 days"
},
{
"@id": "/in-vitro-systems/IGVFSM4287DTSZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4287DTSZ",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 6 days"
},
{
"@id": "/in-vitro-systems/IGVFSM5676UPWP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5676UPWP",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 8 days"
},
{
"@id": "/in-vitro-systems/IGVFSM6224RHBU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6224RHBU",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days"
},
{
"@id": "/in-vitro-systems/IGVFSM1531SWBO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1531SWBO",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days"
},
{
"@id": "/in-vitro-systems/IGVFSM5204GCFW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5204GCFW",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 15 days"
},
{
"@id": "/in-vitro-systems/IGVFSM1618TGKO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1618TGKO",
"donors": [
{
"@id": "/human-donors/IGVFDO1756PPKO/",
"accession": "IGVFDO1756PPKO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 15 days"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:14:16.701338+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0005904/",
"status": "released",
"term_name": "H7-hESC"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/charles-gersbach/",
"status": "current",
"title": "Charles Gersbach, Duke"
},
{
"@id": "/labs/hao-wu/",
"status": "current",
"title": "Hao Wu, UPenn"
},
{
"@id": "/labs/nadav-ahituv/",
"status": "current",
"title": "Nadav Ahituv, UCSF"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (female) H7-hESC differentiated cell specimen; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "9d64a6c3-a5fb-4684-891e-ca0e240ff1e4",
"virtual": false
}