{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM5918RYYX/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5918RYYX",
"aliases": [
"jimmie-ye:XX7-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM5918RYYX](/multiplexed-samples/IGVFSM5918RYYX/) has in progress subobject tabular file [IGVFFI1121SACK](/tabular-files/IGVFFI1121SACK/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5918RYYX/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI1121SACK/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:30.703817+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0878EOUD/",
"accession": "IGVFDO0878EOUD",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1018XCDK/",
"accession": "IGVFDO1018XCDK",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1223BBWO/",
"accession": "IGVFDO1223BBWO",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1505RGEQ/",
"accession": "IGVFDO1505RGEQ",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1536ZZIH/",
"accession": "IGVFDO1536ZZIH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2021BOGM/",
"accession": "IGVFDO2021BOGM",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2097MFIP/",
"accession": "IGVFDO2097MFIP",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3124DPVM/",
"accession": "IGVFDO3124DPVM",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3853ITKH/",
"accession": "IGVFDO3853ITKH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4912KLEZ/",
"accession": "IGVFDO4912KLEZ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6104SHEQ/",
"accession": "IGVFDO6104SHEQ",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6222NHGA/",
"accession": "IGVFDO6222NHGA",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6672GAAP/",
"accession": "IGVFDO6672GAAP",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6842NOPQ/",
"accession": "IGVFDO6842NOPQ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7204IVNY/",
"accession": "IGVFDO7204IVNY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7631SKKR/",
"accession": "IGVFDO7631SKKR",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8118WLRG/",
"accession": "IGVFDO8118WLRG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8731AHWB/",
"accession": "IGVFDO8731AHWB",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9732WKAU/",
"accession": "IGVFDO9732WKAU",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4227BKGR/",
"accession": "IGVFDS4227BKGR",
"aliases": [
"jimmie-ye:XX7-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS6879UVGJ/",
"accession": "IGVFDS6879UVGJ",
"aliases": [
"jimmie-ye:XX7-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS9528JXXW/",
"accession": "IGVFDS9528JXXW",
"aliases": [
"jimmie-ye:XX7-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM4964QBJE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4964QBJE",
"donors": [
{
"@id": "/human-donors/IGVFDO3124DPVM/",
"accession": "IGVFDO3124DPVM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 17.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3553NVUK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3553NVUK",
"donors": [
{
"@id": "/human-donors/IGVFDO7204IVNY/",
"accession": "IGVFDO7204IVNY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0054SEMX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0054SEMX",
"donors": [
{
"@id": "/human-donors/IGVFDO6104SHEQ/",
"accession": "IGVFDO6104SHEQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1166BTWU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1166BTWU",
"donors": [
{
"@id": "/human-donors/IGVFDO4912KLEZ/",
"accession": "IGVFDO4912KLEZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7853IDKM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7853IDKM",
"donors": [
{
"@id": "/human-donors/IGVFDO2021BOGM/",
"accession": "IGVFDO2021BOGM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 52.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2451BABK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2451BABK",
"donors": [
{
"@id": "/human-donors/IGVFDO8731AHWB/",
"accession": "IGVFDO8731AHWB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3365WYEF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3365WYEF",
"donors": [
{
"@id": "/human-donors/IGVFDO1018XCDK/",
"accession": "IGVFDO1018XCDK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3010XLCJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3010XLCJ",
"donors": [
{
"@id": "/human-donors/IGVFDO7631SKKR/",
"accession": "IGVFDO7631SKKR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2581INOE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2581INOE",
"donors": [
{
"@id": "/human-donors/IGVFDO6672GAAP/",
"accession": "IGVFDO6672GAAP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 51.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6678GYHA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6678GYHA",
"donors": [
{
"@id": "/human-donors/IGVFDO3853ITKH/",
"accession": "IGVFDO3853ITKH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8456ZVWA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8456ZVWA",
"donors": [
{
"@id": "/human-donors/IGVFDO2097MFIP/",
"accession": "IGVFDO2097MFIP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 19.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9326JDTO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9326JDTO",
"donors": [
{
"@id": "/human-donors/IGVFDO9732WKAU/",
"accession": "IGVFDO9732WKAU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 22.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8094RRDH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8094RRDH",
"donors": [
{
"@id": "/human-donors/IGVFDO6842NOPQ/",
"accession": "IGVFDO6842NOPQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9798OQTR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9798OQTR",
"donors": [
{
"@id": "/human-donors/IGVFDO1536ZZIH/",
"accession": "IGVFDO1536ZZIH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2989AFWE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2989AFWE",
"donors": [
{
"@id": "/human-donors/IGVFDO1505RGEQ/",
"accession": "IGVFDO1505RGEQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7252JPSV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7252JPSV",
"donors": [
{
"@id": "/human-donors/IGVFDO1223BBWO/",
"accession": "IGVFDO1223BBWO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8742TUGA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8742TUGA",
"donors": [
{
"@id": "/human-donors/IGVFDO8118WLRG/",
"accession": "IGVFDO8118WLRG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2950HTHE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2950HTHE",
"donors": [
{
"@id": "/human-donors/IGVFDO0878EOUD/",
"accession": "IGVFDO0878EOUD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2452RHOA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2452RHOA",
"donors": [
{
"@id": "/human-donors/IGVFDO6222NHGA/",
"accession": "IGVFDO6222NHGA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "fd06462f-4598-464c-81ac-abc725c801a3",
"virtual": false
}