{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM5737IONT/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5737IONT",
"aliases": [
"jimmie-ye:XX15-SC3"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM5737IONT](/multiplexed-samples/IGVFSM5737IONT/) has in progress subobject tabular file [IGVFFI3034SAEM](/tabular-files/IGVFFI3034SAEM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5737IONT/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI3034SAEM/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:59.973418+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0082JSOB/",
"accession": "IGVFDO0082JSOB",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0287RIWJ/",
"accession": "IGVFDO0287RIWJ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1881RNKM/",
"accession": "IGVFDO1881RNKM",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2696HGER/",
"accession": "IGVFDO2696HGER",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5328MCOF/",
"accession": "IGVFDO5328MCOF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6057RTOI/",
"accession": "IGVFDO6057RTOI",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6225VCFJ/",
"accession": "IGVFDO6225VCFJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6487UZPC/",
"accession": "IGVFDO6487UZPC",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6494ETQD/",
"accession": "IGVFDO6494ETQD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7109MRSV/",
"accession": "IGVFDO7109MRSV",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7264PRBG/",
"accession": "IGVFDO7264PRBG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7463BCHH/",
"accession": "IGVFDO7463BCHH",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7490MDYK/",
"accession": "IGVFDO7490MDYK",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7916YRKT/",
"accession": "IGVFDO7916YRKT",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8167OHGI/",
"accession": "IGVFDO8167OHGI",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9746GLBM/",
"accession": "IGVFDO9746GLBM",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9941UDYG/",
"accession": "IGVFDO9941UDYG",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS9120JYMC/",
"accession": "IGVFDS9120JYMC",
"aliases": [
"jimmie-ye:XX15-SC3_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS4099RLTS/",
"accession": "IGVFDS4099RLTS",
"aliases": [
"jimmie-ye:XX15-SC3_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS9596HEWM/",
"accession": "IGVFDS9596HEWM",
"aliases": [
"jimmie-ye:XX15-SC3-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM1892CLVN/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1892CLVN",
"donors": [
{
"@id": "/human-donors/IGVFDO0287RIWJ/",
"accession": "IGVFDO0287RIWJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0819SKYP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0819SKYP",
"donors": [
{
"@id": "/human-donors/IGVFDO6494ETQD/",
"accession": "IGVFDO6494ETQD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5467DGTY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5467DGTY",
"donors": [
{
"@id": "/human-donors/IGVFDO7463BCHH/",
"accession": "IGVFDO7463BCHH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6660TFBG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6660TFBG",
"donors": [
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9785LBSW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9785LBSW",
"donors": [
{
"@id": "/human-donors/IGVFDO6487UZPC/",
"accession": "IGVFDO6487UZPC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7311DJUV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7311DJUV",
"donors": [
{
"@id": "/human-donors/IGVFDO5328MCOF/",
"accession": "IGVFDO5328MCOF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2972CYHS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2972CYHS",
"donors": [
{
"@id": "/human-donors/IGVFDO6057RTOI/",
"accession": "IGVFDO6057RTOI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5597LLJL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5597LLJL",
"donors": [
{
"@id": "/human-donors/IGVFDO0082JSOB/",
"accession": "IGVFDO0082JSOB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0406DLPN/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0406DLPN",
"donors": [
{
"@id": "/human-donors/IGVFDO6225VCFJ/",
"accession": "IGVFDO6225VCFJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1711IVLM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1711IVLM",
"donors": [
{
"@id": "/human-donors/IGVFDO2696HGER/",
"accession": "IGVFDO2696HGER",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1498IMKU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1498IMKU",
"donors": [
{
"@id": "/human-donors/IGVFDO1881RNKM/",
"accession": "IGVFDO1881RNKM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6643XJWZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6643XJWZ",
"donors": [
{
"@id": "/human-donors/IGVFDO7264PRBG/",
"accession": "IGVFDO7264PRBG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 43.26821 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0016LYKC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0016LYKC",
"donors": [
{
"@id": "/human-donors/IGVFDO8167OHGI/",
"accession": "IGVFDO8167OHGI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5677RNDI/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5677RNDI",
"donors": [
{
"@id": "/human-donors/IGVFDO9746GLBM/",
"accession": "IGVFDO9746GLBM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9347PWBZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9347PWBZ",
"donors": [
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8247HNDL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8247HNDL",
"donors": [
{
"@id": "/human-donors/IGVFDO7916YRKT/",
"accession": "IGVFDO7916YRKT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2554RXOU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2554RXOU",
"donors": [
{
"@id": "/human-donors/IGVFDO9941UDYG/",
"accession": "IGVFDO9941UDYG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 51.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2544RKEY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2544RKEY",
"donors": [
{
"@id": "/human-donors/IGVFDO7490MDYK/",
"accession": "IGVFDO7490MDYK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 21.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8920VVKX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8920VVKX",
"donors": [
{
"@id": "/human-donors/IGVFDO7109MRSV/",
"accession": "IGVFDO7109MRSV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9082NMNZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9082NMNZ",
"donors": [
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 37.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "236b1beb-992e-4074-bba8-39b0c42fb585",
"virtual": false
}