B cell — IGVFSM5472KWSO

1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM5472KWSO/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM5472KWSO",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20240212"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012041/",
16        "component": "networks"
17    },
18    "barcode_map": "/tabular-files/IGVFFI5389DBIZ/",
19    "biomarkers": [],
20    "classifications": [
21        "differentiated cell specimen",
22        "multiplexed sample"
23    ],
24    "creation_timestamp": "2025-01-14T16:12:24.151274+00:00",
25    "description": "2024-02-12 multiplexed sample: day 4 and day 6 perturbed cells",
26    "disease_terms": [],
27    "donors": [
28        {
29            "@id": "/human-donors/IGVFDO9916UELD/",
30            "accession": "IGVFDO9916UELD",
31            "ethnicities": [
32                "African American"
33            ],
34            "status": "preview"
35        }
36    ],
37    "file_sets": [
38        {
39            "@id": "/measurement-sets/IGVFDS5867EPVA/",
40            "accession": "IGVFDS5867EPVA",
41            "aliases": [
42                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_measurement"
43            ],
44            "file_set_type": "experimental data",
45            "lab": {
46                "title": "Harinder Singh, University of Pittsburgh"
47            },
48            "preferred_assay_title": "scRNA-seq",
49            "status": "preview",
50            "summary": "scRNA-seq"
51        },
52        {
53            "@id": "/analysis-sets/IGVFDS4623YEKE/",
54            "accession": "IGVFDS4623YEKE",
55            "aliases": [
56                "harinder-singh:AnalysisSet_measurement-IGVFDS5867EPVA_sc-uniform-pipeline"
57            ],
58            "file_set_type": "intermediate analysis",
59            "lab": {
60                "title": "Harinder Singh, University of Pittsburgh"
61            },
62            "status": "in progress",
63            "summary": "scRNA-seq"
64        },
65        {
66            "@id": "/analysis-sets/IGVFDS6790TZFT/",
67            "accession": "IGVFDS6790TZFT",
68            "aliases": [
69                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_cellranger_analysis_set"
70            ],
71            "file_set_type": "intermediate analysis",
72            "lab": {
73                "title": "Harinder Singh, University of Pittsburgh"
74            },
75            "status": "preview",
76            "summary": "scRNA-seq: sparse gene count matrix"
77        },
78        {
79            "@id": "/analysis-sets/IGVFDS7845HWEA/",
80            "accession": "IGVFDS7845HWEA",
81            "aliases": [
82                "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_mira_analysis_set"
83            ],
84            "file_set_type": "principal analysis",
85            "lab": {
86                "title": "Harinder Singh, University of Pittsburgh"
87            },
88            "status": "preview",
89            "summary": "scRNA-seq: sparse gene count matrix"
90        }
91    ],
92    "institutional_certificates": [
93        {
94            "@id": "/institutional-certificates/4786e123-f40d-4b08-aa06-b5f35e9cc453/",
95            "certificate_identifier": "IP108-01",
96            "controlled_access": true,
97            "data_use_limitation": "HMB",
98            "data_use_limitation_summary": "HMB",
99            "status": "in progress"
100        }
101    ],
102    "lab": {
103        "@id": "/labs/harinder-singh/",
104        "title": "Harinder Singh, University of Pittsburgh"
105    },
106    "modifications": [],
107    "multiplexed_in": [],
108    "multiplexed_samples": [
109        {
110            "@id": "/in-vitro-systems/IGVFSM8570AWHK/",
111            "@type": [
112                "InVitroSystem",
113                "Biosample",
114                "Sample",
115                "Item"
116            ],
117            "accession": "IGVFSM8570AWHK",
118            "donors": [
119                {
120                    "@id": "/human-donors/IGVFDO9916UELD/",
121                    "accession": "IGVFDO9916UELD",
122                    "status": "preview"
123                }
124            ],
125            "sample_terms": [
126                {
127                    "@id": "/sample-terms/CL_0000236/",
128                    "status": "released",
129                    "term_name": "B cell"
130                }
131            ],
132            "status": "preview",
133            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
134        },
135        {
136            "@id": "/in-vitro-systems/IGVFSM6397OVNK/",
137            "@type": [
138                "InVitroSystem",
139                "Biosample",
140                "Sample",
141                "Item"
142            ],
143            "accession": "IGVFSM6397OVNK",
144            "donors": [
145                {
146                    "@id": "/human-donors/IGVFDO9916UELD/",
147                    "accession": "IGVFDO9916UELD",
148                    "status": "preview"
149                }
150            ],
151            "sample_terms": [
152                {
153                    "@id": "/sample-terms/CL_0000236/",
154                    "status": "released",
155                    "term_name": "B cell"
156                }
157            ],
158            "status": "preview",
159            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
160        },
161        {
162            "@id": "/in-vitro-systems/IGVFSM4032GHSS/",
163            "@type": [
164                "InVitroSystem",
165                "Biosample",
166                "Sample",
167                "Item"
168            ],
169            "accession": "IGVFSM4032GHSS",
170            "donors": [
171                {
172                    "@id": "/human-donors/IGVFDO9916UELD/",
173                    "accession": "IGVFDO9916UELD",
174                    "status": "preview"
175                }
176            ],
177            "sample_terms": [
178                {
179                    "@id": "/sample-terms/CL_0000236/",
180                    "status": "released",
181                    "term_name": "B cell"
182                }
183            ],
184            "status": "preview",
185            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
186        },
187        {
188            "@id": "/in-vitro-systems/IGVFSM5300OQLE/",
189            "@type": [
190                "InVitroSystem",
191                "Biosample",
192                "Sample",
193                "Item"
194            ],
195            "accession": "IGVFSM5300OQLE",
196            "donors": [
197                {
198                    "@id": "/human-donors/IGVFDO9916UELD/",
199                    "accession": "IGVFDO9916UELD",
200                    "status": "preview"
201                }
202            ],
203            "sample_terms": [
204                {
205                    "@id": "/sample-terms/CL_0000236/",
206                    "status": "released",
207                    "term_name": "B cell"
208                }
209            ],
210            "status": "preview",
211            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
212        },
213        {
214            "@id": "/in-vitro-systems/IGVFSM0356CSFU/",
215            "@type": [
216                "InVitroSystem",
217                "Biosample",
218                "Sample",
219                "Item"
220            ],
221            "accession": "IGVFSM0356CSFU",
222            "donors": [
223                {
224                    "@id": "/human-donors/IGVFDO9916UELD/",
225                    "accession": "IGVFDO9916UELD",
226                    "status": "preview"
227                }
228            ],
229            "sample_terms": [
230                {
231                    "@id": "/sample-terms/CL_0000236/",
232                    "status": "released",
233                    "term_name": "B cell"
234                }
235            ],
236            "status": "preview",
237            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
238        },
239        {
240            "@id": "/in-vitro-systems/IGVFSM6321UXPS/",
241            "@type": [
242                "InVitroSystem",
243                "Biosample",
244                "Sample",
245                "Item"
246            ],
247            "accession": "IGVFSM6321UXPS",
248            "donors": [
249                {
250                    "@id": "/human-donors/IGVFDO9916UELD/",
251                    "accession": "IGVFDO9916UELD",
252                    "status": "preview"
253                }
254            ],
255            "sample_terms": [
256                {
257                    "@id": "/sample-terms/CL_0000236/",
258                    "status": "released",
259                    "term_name": "B cell"
260                }
261            ],
262            "status": "preview",
263            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
264        },
265        {
266            "@id": "/in-vitro-systems/IGVFSM4377XIGA/",
267            "@type": [
268                "InVitroSystem",
269                "Biosample",
270                "Sample",
271                "Item"
272            ],
273            "accession": "IGVFSM4377XIGA",
274            "donors": [
275                {
276                    "@id": "/human-donors/IGVFDO9916UELD/",
277                    "accession": "IGVFDO9916UELD",
278                    "status": "preview"
279                }
280            ],
281            "sample_terms": [
282                {
283                    "@id": "/sample-terms/CL_0000236/",
284                    "status": "released",
285                    "term_name": "B cell"
286                }
287            ],
288            "status": "preview",
289            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
290        },
291        {
292            "@id": "/in-vitro-systems/IGVFSM2563GZYF/",
293            "@type": [
294                "InVitroSystem",
295                "Biosample",
296                "Sample",
297                "Item"
298            ],
299            "accession": "IGVFSM2563GZYF",
300            "donors": [
301                {
302                    "@id": "/human-donors/IGVFDO9916UELD/",
303                    "accession": "IGVFDO9916UELD",
304                    "status": "preview"
305                }
306            ],
307            "sample_terms": [
308                {
309                    "@id": "/sample-terms/CL_0000236/",
310                    "status": "released",
311                    "term_name": "B cell"
312                }
313            ],
314            "status": "preview",
315            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
316        },
317        {
318            "@id": "/in-vitro-systems/IGVFSM2148LSUX/",
319            "@type": [
320                "InVitroSystem",
321                "Biosample",
322                "Sample",
323                "Item"
324            ],
325            "accession": "IGVFSM2148LSUX",
326            "donors": [
327                {
328                    "@id": "/human-donors/IGVFDO9916UELD/",
329                    "accession": "IGVFDO9916UELD",
330                    "status": "preview"
331                }
332            ],
333            "sample_terms": [
334                {
335                    "@id": "/sample-terms/CL_0000236/",
336                    "status": "released",
337                    "term_name": "B cell"
338                }
339            ],
340            "status": "preview",
341            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
342        },
343        {
344            "@id": "/in-vitro-systems/IGVFSM7574QLHB/",
345            "@type": [
346                "InVitroSystem",
347                "Biosample",
348                "Sample",
349                "Item"
350            ],
351            "accession": "IGVFSM7574QLHB",
352            "donors": [
353                {
354                    "@id": "/human-donors/IGVFDO9916UELD/",
355                    "accession": "IGVFDO9916UELD",
356                    "status": "preview"
357                }
358            ],
359            "sample_terms": [
360                {
361                    "@id": "/sample-terms/CL_0000236/",
362                    "status": "released",
363                    "term_name": "B cell"
364                }
365            ],
366            "status": "preview",
367            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
368        },
369        {
370            "@id": "/in-vitro-systems/IGVFSM0775OOOW/",
371            "@type": [
372                "InVitroSystem",
373                "Biosample",
374                "Sample",
375                "Item"
376            ],
377            "accession": "IGVFSM0775OOOW",
378            "donors": [
379                {
380                    "@id": "/human-donors/IGVFDO9916UELD/",
381                    "accession": "IGVFDO9916UELD",
382                    "status": "preview"
383                }
384            ],
385            "sample_terms": [
386                {
387                    "@id": "/sample-terms/CL_0000236/",
388                    "status": "released",
389                    "term_name": "B cell"
390                }
391            ],
392            "status": "preview",
393            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
394        },
395        {
396            "@id": "/in-vitro-systems/IGVFSM1063XWYJ/",
397            "@type": [
398                "InVitroSystem",
399                "Biosample",
400                "Sample",
401                "Item"
402            ],
403            "accession": "IGVFSM1063XWYJ",
404            "donors": [
405                {
406                    "@id": "/human-donors/IGVFDO9916UELD/",
407                    "accession": "IGVFDO9916UELD",
408                    "status": "preview"
409                }
410            ],
411            "sample_terms": [
412                {
413                    "@id": "/sample-terms/CL_0000236/",
414                    "status": "released",
415                    "term_name": "B cell"
416                }
417            ],
418            "status": "preview",
419            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
420        },
421        {
422            "@id": "/in-vitro-systems/IGVFSM6944DYFV/",
423            "@type": [
424                "InVitroSystem",
425                "Biosample",
426                "Sample",
427                "Item"
428            ],
429            "accession": "IGVFSM6944DYFV",
430            "donors": [
431                {
432                    "@id": "/human-donors/IGVFDO9916UELD/",
433                    "accession": "IGVFDO9916UELD",
434                    "status": "preview"
435                }
436            ],
437            "sample_terms": [
438                {
439                    "@id": "/sample-terms/CL_0000236/",
440                    "status": "released",
441                    "term_name": "B cell"
442                }
443            ],
444            "status": "preview",
445            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
446        },
447        {
448            "@id": "/in-vitro-systems/IGVFSM5494XOQQ/",
449            "@type": [
450                "InVitroSystem",
451                "Biosample",
452                "Sample",
453                "Item"
454            ],
455            "accession": "IGVFSM5494XOQQ",
456            "donors": [
457                {
458                    "@id": "/human-donors/IGVFDO9916UELD/",
459                    "accession": "IGVFDO9916UELD",
460                    "status": "preview"
461                }
462            ],
463            "sample_terms": [
464                {
465                    "@id": "/sample-terms/CL_0000236/",
466                    "status": "released",
467                    "term_name": "B cell"
468                }
469            ],
470            "status": "preview",
471            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
472        }
473    ],
474    "multiplexing_methods": [
475        "barcode based"
476    ],
477    "origin_of": [],
478    "sample_terms": [
479        {
480            "@id": "/sample-terms/CL_0000236/",
481            "status": "released",
482            "term_name": "B cell"
483        }
484    ],
485    "schema_version": "10",
486    "sorted_fractions": [],
487    "sources": [
488        {
489            "@id": "/sources/stem-cell-technologies/",
490            "status": "released",
491            "title": "STEMCELL Technologies"
492        }
493    ],
494    "status": "preview",
495    "submitted_by": {
496        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
497        "title": "Nicholas Pease"
498    },
499    "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 12 more samples",
500    "taxa": "Homo sapiens",
501    "treatments": [],
502    "uuid": "ebaebc2d-ff50-41dc-b20c-65ade21cb901",
503    "virtual": false
504}