{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM5108TWAL/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM5108TWAL",
"aliases": [
"jimmie-ye:XX10-SC4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM5108TWAL](/multiplexed-samples/IGVFSM5108TWAL/) has in progress subobject tabular file [IGVFFI9571WQGR](/tabular-files/IGVFFI9571WQGR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM5108TWAL/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI9571WQGR/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:49.203770+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0636EZMX/",
"accession": "IGVFDO0636EZMX",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1206XURT/",
"accession": "IGVFDO1206XURT",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1581MZPD/",
"accession": "IGVFDO1581MZPD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2123UUXN/",
"accession": "IGVFDO2123UUXN",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2157WUCZ/",
"accession": "IGVFDO2157WUCZ",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2494RNPN/",
"accession": "IGVFDO2494RNPN",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3409GRWE/",
"accession": "IGVFDO3409GRWE",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3573HTIO/",
"accession": "IGVFDO3573HTIO",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4593QHST/",
"accession": "IGVFDO4593QHST",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4644IQGV/",
"accession": "IGVFDO4644IQGV",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5089ZUEV/",
"accession": "IGVFDO5089ZUEV",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5541NTKV/",
"accession": "IGVFDO5541NTKV",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7281RPEM/",
"accession": "IGVFDO7281RPEM",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7340HFEI/",
"accession": "IGVFDO7340HFEI",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7439WBOO/",
"accession": "IGVFDO7439WBOO",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7541RWIS/",
"accession": "IGVFDO7541RWIS",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9303LRUW/",
"accession": "IGVFDO9303LRUW",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9441YSWF/",
"accession": "IGVFDO9441YSWF",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9959VAEV/",
"accession": "IGVFDO9959VAEV",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS2907ITTR/",
"accession": "IGVFDS2907ITTR",
"aliases": [
"jimmie-ye:XX10-SC4_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS0506QTXH/",
"accession": "IGVFDS0506QTXH",
"aliases": [
"jimmie-ye:XX10-SC4_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3443HOFX/",
"accession": "IGVFDS3443HOFX",
"aliases": [
"jimmie-ye:XX10-SC4-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM7972LQUK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7972LQUK",
"donors": [
{
"@id": "/human-donors/IGVFDO1206XURT/",
"accession": "IGVFDO1206XURT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 43.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9075YUUB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9075YUUB",
"donors": [
{
"@id": "/human-donors/IGVFDO7439WBOO/",
"accession": "IGVFDO7439WBOO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1679YVOK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1679YVOK",
"donors": [
{
"@id": "/human-donors/IGVFDO0636EZMX/",
"accession": "IGVFDO0636EZMX",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4035POEE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4035POEE",
"donors": [
{
"@id": "/human-donors/IGVFDO2123UUXN/",
"accession": "IGVFDO2123UUXN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 37.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4644DVGJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4644DVGJ",
"donors": [
{
"@id": "/human-donors/IGVFDO5541NTKV/",
"accession": "IGVFDO5541NTKV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3256JUMG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3256JUMG",
"donors": [
{
"@id": "/human-donors/IGVFDO7541RWIS/",
"accession": "IGVFDO7541RWIS",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3957YRQB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3957YRQB",
"donors": [
{
"@id": "/human-donors/IGVFDO2157WUCZ/",
"accession": "IGVFDO2157WUCZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7328MJHB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7328MJHB",
"donors": [
{
"@id": "/human-donors/IGVFDO1581MZPD/",
"accession": "IGVFDO1581MZPD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4878YPBJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4878YPBJ",
"donors": [
{
"@id": "/human-donors/IGVFDO7281RPEM/",
"accession": "IGVFDO7281RPEM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6002NGSB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6002NGSB",
"donors": [
{
"@id": "/human-donors/IGVFDO3573HTIO/",
"accession": "IGVFDO3573HTIO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8032BSWP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8032BSWP",
"donors": [
{
"@id": "/human-donors/IGVFDO3409GRWE/",
"accession": "IGVFDO3409GRWE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9302OCZB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9302OCZB",
"donors": [
{
"@id": "/human-donors/IGVFDO7340HFEI/",
"accession": "IGVFDO7340HFEI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 54.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8538TQKW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8538TQKW",
"donors": [
{
"@id": "/human-donors/IGVFDO9959VAEV/",
"accession": "IGVFDO9959VAEV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 53.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0707CVFG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0707CVFG",
"donors": [
{
"@id": "/human-donors/IGVFDO9441YSWF/",
"accession": "IGVFDO9441YSWF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0818KIJJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0818KIJJ",
"donors": [
{
"@id": "/human-donors/IGVFDO2494RNPN/",
"accession": "IGVFDO2494RNPN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2840SWKD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2840SWKD",
"donors": [
{
"@id": "/human-donors/IGVFDO5089ZUEV/",
"accession": "IGVFDO5089ZUEV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4628CCHQ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4628CCHQ",
"donors": [
{
"@id": "/human-donors/IGVFDO4593QHST/",
"accession": "IGVFDO4593QHST",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1899KYVU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1899KYVU",
"donors": [
{
"@id": "/human-donors/IGVFDO4644IQGV/",
"accession": "IGVFDO4644IQGV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9539LLTE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9539LLTE",
"donors": [
{
"@id": "/human-donors/IGVFDO9303LRUW/",
"accession": "IGVFDO9303LRUW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 26.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (male, 29.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "53dcceb0-26bb-49f6-b9bb-0994884a7e6b",
"virtual": false
}