{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM4662QKFQ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM4662QKFQ",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf1_10x1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6234HMHR](/in-vitro-systems/IGVFSM6234HMHR/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6234HMHR/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1339BLKW](/in-vitro-systems/IGVFSM1339BLKW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1339BLKW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2756JQPW](/in-vitro-systems/IGVFSM2756JQPW/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2756JQPW/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1504TJKY](/in-vitro-systems/IGVFSM1504TJKY/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1504TJKY/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4260RWPQ](/in-vitro-systems/IGVFSM4260RWPQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4260RWPQ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2658JCPY](/in-vitro-systems/IGVFSM2658JCPY/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2658JCPY/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8324DSXQ](/in-vitro-systems/IGVFSM8324DSXQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8324DSXQ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5069WVUG](/in-vitro-systems/IGVFSM5069WVUG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5069WVUG/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM6567SBEG](/in-vitro-systems/IGVFSM6567SBEG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM6567SBEG/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8872QDFM](/in-vitro-systems/IGVFSM8872QDFM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8872QDFM/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5215BCRK](/in-vitro-systems/IGVFSM5215BCRK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5215BCRK/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7166LGBJ](/in-vitro-systems/IGVFSM7166LGBJ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7166LGBJ/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM4662QKFQ](/multiplexed-samples/IGVFSM4662QKFQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM4662QKFQ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4243BLUK](/in-vitro-systems/IGVFSM4243BLUK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4243BLUK/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM2502GELL](/in-vitro-systems/IGVFSM2502GELL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM2502GELL/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8071ZBCL](/in-vitro-systems/IGVFSM8071ZBCL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8071ZBCL/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI3653QRKF/",
"biomarkers": [],
"classifications": [
"cell line",
"multiplexed sample"
],
"creation_timestamp": "2024-07-19T21:29:21.154427+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"ethnicities": [
"Japanese"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2115EOOA/",
"accession": "IGVFDO2115EOOA",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO2722UPGC/",
"accession": "IGVFDO2722UPGC",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO9571CSNU/",
"accession": "IGVFDO9571CSNU",
"status": "released"
}
],
"file_sets": [
{
"@id": "/auxiliary-sets/IGVFDS3259WGKQ/",
"accession": "IGVFDS3259WGKQ",
"aliases": [
"ansuman-satpathy:multiseq_igvf1_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS3744SQTD/",
"accession": "IGVFDS3744SQTD",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf1_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS1555ZQOW/",
"accession": "IGVFDS1555ZQOW",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf1_10x1"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS8205NXKP/",
"accession": "IGVFDS8205NXKP",
"aliases": [
"ansuman-satpathy:igvf1_analysis_set",
"ansuman-satpathy:igvf1_analysis_set_10x1"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/16883984-b168-4b68-bc2a-37ef58354571/",
"certificate_identifier": "IP115-04",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/53fbaed7-f4c0-4932-bf77-254568743089/",
"certificate_identifier": "IP115-10",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/5e0fa625-6c72-4f32-872e-bcbc6acf630b/",
"certificate_identifier": "IP115-17",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/8ef1d59e-ef62-4890-b0ea-086d37645c75/",
"certificate_identifier": "IP115-02",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
},
{
"@id": "/institutional-certificates/d997512b-2c33-48e5-ae36-a94fd2959427/",
"certificate_identifier": "IP115-19",
"controlled_access": false,
"data_use_limitation_summary": "No limitations",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM7166LGBJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7166LGBJ",
"donors": [
{
"@id": "/human-donors/IGVFDO9571CSNU/",
"accession": "IGVFDO9571CSNU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002869/",
"status": "released",
"term_name": "U2OS"
}
],
"status": "released",
"summary": "Homo sapiens (female) U2OS cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM2658JCPY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2658JCPY",
"donors": [
{
"@id": "/human-donors/IGVFDO9571CSNU/",
"accession": "IGVFDO9571CSNU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002869/",
"status": "released",
"term_name": "U2OS"
}
],
"status": "released",
"summary": "Homo sapiens (female) U2OS cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM6567SBEG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6567SBEG",
"donors": [
{
"@id": "/human-donors/IGVFDO9571CSNU/",
"accession": "IGVFDO9571CSNU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002869/",
"status": "released",
"term_name": "U2OS"
}
],
"status": "released",
"summary": "Homo sapiens (female) U2OS cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM1504TJKY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1504TJKY",
"donors": [
{
"@id": "/human-donors/IGVFDO2722UPGC/",
"accession": "IGVFDO2722UPGC",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0007598/",
"status": "released",
"term_name": "HAP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) HAP-1 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM8071ZBCL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8071ZBCL",
"donors": [
{
"@id": "/human-donors/IGVFDO2722UPGC/",
"accession": "IGVFDO2722UPGC",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0007598/",
"status": "released",
"term_name": "HAP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) HAP-1 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM1339BLKW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1339BLKW",
"donors": [
{
"@id": "/human-donors/IGVFDO2722UPGC/",
"accession": "IGVFDO2722UPGC",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0007598/",
"status": "released",
"term_name": "HAP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) HAP-1 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM5069WVUG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5069WVUG",
"donors": [
{
"@id": "/human-donors/IGVFDO2115EOOA/",
"accession": "IGVFDO2115EOOA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002793/",
"status": "released",
"term_name": "HL-60"
}
],
"status": "released",
"summary": "Homo sapiens (female) HL-60 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM5215BCRK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5215BCRK",
"donors": [
{
"@id": "/human-donors/IGVFDO2115EOOA/",
"accession": "IGVFDO2115EOOA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002793/",
"status": "released",
"term_name": "HL-60"
}
],
"status": "released",
"summary": "Homo sapiens (female) HL-60 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM8324DSXQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8324DSXQ",
"donors": [
{
"@id": "/human-donors/IGVFDO2115EOOA/",
"accession": "IGVFDO2115EOOA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002793/",
"status": "released",
"term_name": "HL-60"
}
],
"status": "released",
"summary": "Homo sapiens (female) HL-60 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM4260RWPQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4260RWPQ",
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "Homo sapiens (female) K562 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM4243BLUK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4243BLUK",
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "Homo sapiens (female) K562 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM6234HMHR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6234HMHR",
"donors": [
{
"@id": "/human-donors/IGVFDO9208RPQQ/",
"accession": "IGVFDO9208RPQQ",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "Homo sapiens (female) K562 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM8872QDFM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8872QDFM",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "Homo sapiens HUDEP-2 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM2502GELL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2502GELL",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "Homo sapiens HUDEP-2 cell line"
},
{
"@id": "/in-vitro-systems/IGVFSM2756JQPW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2756JQPW",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "Homo sapiens HUDEP-2 cell line"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:10:28.442287+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
},
{
"@id": "/sample-terms/EFO_0002793/",
"status": "released",
"term_name": "HL-60"
},
{
"@id": "/sample-terms/EFO_0002869/",
"status": "released",
"term_name": "U2OS"
},
{
"@id": "/sample-terms/EFO_0007598/",
"status": "released",
"term_name": "HAP-1"
},
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/daniel-bauer/",
"status": "current",
"title": "Daniel Bauer, HSCI"
},
{
"@id": "/labs/jay-shendure/",
"status": "current",
"title": "Jay Shendure, UW"
},
{
"@id": "/labs/lea-starita/",
"status": "current",
"title": "Lea Starita, UW"
},
{
"@id": "/labs/mikko-taipale/",
"status": "current",
"title": "Mikko Taipale, UToronto"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (male) HAP-1 cell line; Homo sapiens (male) HAP-1 cell line; ... and 13 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "1ef1dae6-0fa1-4b63-82a3-253e7af774a3",
"virtual": false
}