{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM3449BLEO/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3449BLEO",
"aliases": [
"jimmie-ye:XX8-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM3449BLEO](/multiplexed-samples/IGVFSM3449BLEO/) has in progress subobject tabular file [IGVFFI9632WZII](/tabular-files/IGVFFI9632WZII/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM3449BLEO/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI9632WZII/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:33.669926+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0611IZWA/",
"accession": "IGVFDO0611IZWA",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0832MKLB/",
"accession": "IGVFDO0832MKLB",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0981AWNH/",
"accession": "IGVFDO0981AWNH",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1259OYEU/",
"accession": "IGVFDO1259OYEU",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1684FBAQ/",
"accession": "IGVFDO1684FBAQ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2354YSJQ/",
"accession": "IGVFDO2354YSJQ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4017UKOH/",
"accession": "IGVFDO4017UKOH",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4022UBXD/",
"accession": "IGVFDO4022UBXD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5077XACB/",
"accession": "IGVFDO5077XACB",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6094ZBJQ/",
"accession": "IGVFDO6094ZBJQ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6356VGZI/",
"accession": "IGVFDO6356VGZI",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6823IRJG/",
"accession": "IGVFDO6823IRJG",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6865EJIU/",
"accession": "IGVFDO6865EJIU",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7888FEQZ/",
"accession": "IGVFDO7888FEQZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8210ZYFU/",
"accession": "IGVFDO8210ZYFU",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9142UFHT/",
"accession": "IGVFDO9142UFHT",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9765ZYZB/",
"accession": "IGVFDO9765ZYZB",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4257XYUS/",
"accession": "IGVFDS4257XYUS",
"aliases": [
"jimmie-ye:XX8-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS5278MDTO/",
"accession": "IGVFDS5278MDTO",
"aliases": [
"jimmie-ye:XX8-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS3710TTVT/",
"accession": "IGVFDS3710TTVT",
"aliases": [
"jimmie-ye:XX8-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM2008CFYV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2008CFYV",
"donors": [
{
"@id": "/human-donors/IGVFDO4022UBXD/",
"accession": "IGVFDO4022UBXD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6578IEOS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6578IEOS",
"donors": [
{
"@id": "/human-donors/IGVFDO0981AWNH/",
"accession": "IGVFDO0981AWNH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1055QGDK/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1055QGDK",
"donors": [
{
"@id": "/human-donors/IGVFDO0832MKLB/",
"accession": "IGVFDO0832MKLB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9055FKNR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9055FKNR",
"donors": [
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 37.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4806UUJZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4806UUJZ",
"donors": [
{
"@id": "/human-donors/IGVFDO1259OYEU/",
"accession": "IGVFDO1259OYEU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 44.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5833HQVB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5833HQVB",
"donors": [
{
"@id": "/human-donors/IGVFDO6356VGZI/",
"accession": "IGVFDO6356VGZI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9174KQNH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9174KQNH",
"donors": [
{
"@id": "/human-donors/IGVFDO6094ZBJQ/",
"accession": "IGVFDO6094ZBJQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7926ZYJU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7926ZYJU",
"donors": [
{
"@id": "/human-donors/IGVFDO5077XACB/",
"accession": "IGVFDO5077XACB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1392UDIY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1392UDIY",
"donors": [
{
"@id": "/human-donors/IGVFDO6823IRJG/",
"accession": "IGVFDO6823IRJG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7137SUCF/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7137SUCF",
"donors": [
{
"@id": "/human-donors/IGVFDO7888FEQZ/",
"accession": "IGVFDO7888FEQZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9943HIES/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9943HIES",
"donors": [
{
"@id": "/human-donors/IGVFDO0611IZWA/",
"accession": "IGVFDO0611IZWA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9473ILXO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9473ILXO",
"donors": [
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5140MYKE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5140MYKE",
"donors": [
{
"@id": "/human-donors/IGVFDO9142UFHT/",
"accession": "IGVFDO9142UFHT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 30.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5875YETU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5875YETU",
"donors": [
{
"@id": "/human-donors/IGVFDO4017UKOH/",
"accession": "IGVFDO4017UKOH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 35.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2332OVZV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2332OVZV",
"donors": [
{
"@id": "/human-donors/IGVFDO9765ZYZB/",
"accession": "IGVFDO9765ZYZB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1916ZSTS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1916ZSTS",
"donors": [
{
"@id": "/human-donors/IGVFDO8210ZYFU/",
"accession": "IGVFDO8210ZYFU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 54.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6733LSUT/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6733LSUT",
"donors": [
{
"@id": "/human-donors/IGVFDO6865EJIU/",
"accession": "IGVFDO6865EJIU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6497VIVJ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6497VIVJ",
"donors": [
{
"@id": "/human-donors/IGVFDO1684FBAQ/",
"accession": "IGVFDO1684FBAQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2543NTCS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2543NTCS",
"donors": [
{
"@id": "/human-donors/IGVFDO2354YSJQ/",
"accession": "IGVFDO2354YSJQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 48.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "f14a4a06-66a8-47f2-8458-785c7c397102",
"virtual": false
}