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HEK293T — IGVFSM3106AWHF

released
Summary
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
Multiplexing Method
barcode based
Sources
Barcode Map
IGVFFI9514YCRW
Taxa
Homo sapiens
Aliases
ansuman-satpathy:multiplexed_sample_igvf5_10x4
Protocols

Donors

4 items
Aliases
  • igvf:donor_of_HEK293T
female
Homo sapiens
  • igvf:donor_of_WTC11
male
Homo sapiens
  • igvf:donor_of_H9
female
Homo sapiens
  • igvf:donor_of_H1
male
Homo sapiens

File Sets

4 items
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf5_10x4
Ansuman Satpathy, Stanford
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf5_10x4
Ansuman Satpathy, Stanford
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf5_10x4
Ansuman Satpathy, Stanford
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf5_analysis_set
Ansuman Satpathy, Stanford

Multiplexed Samples

8 items
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens
InVitroSystem
H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens
InVitroSystem
H1-hESC induced to gastrula for 2 days, male, Homo sapiens
InVitroSystem
HEK293T cell line, female, Homo sapiens
InVitroSystem
HEK293T cell line, female, Homo sapiens
InVitroSystem
H9 differentiated cell specimen induced to neuron for 20 days, female, Homo sapiens
InVitroSystem
H9 differentiated cell specimen induced to neuron for 11 days, female, Homo sapiens
InVitroSystem
GM25256 (WTC-11) cell line, male, Homo sapiens

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford