putamen — IGVFSM2825UXQB

preview
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM2825UXQB/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM2825UXQB",
10    "aliases": [
11        "igvf:corces_multiplexedSample_X046_G1"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012076/",
16        "component": "mapping"
17    },
18    "biomarkers": [],
19    "classifications": [
20        "tissue",
21        "multiplexed sample"
22    ],
23    "creation_timestamp": "2025-03-19T18:02:48.921353+00:00",
24    "disease_terms": [
25        {
26            "@id": "/phenotype-terms/DOID_0080832/",
27            "status": "in progress",
28            "term_name": "mild cognitive impairment"
29        },
30        {
31            "@id": "/phenotype-terms/DOID_14330/",
32            "status": "in progress",
33            "term_name": "Parkinson's disease"
34        },
35        {
36            "@id": "/phenotype-terms/DOID_2377/",
37            "status": "in progress",
38            "term_name": "multiple sclerosis"
39        },
40        {
41            "@id": "/phenotype-terms/DOID_9246/",
42            "status": "in progress",
43            "term_name": "cerebral amyloid angiopathy"
44        },
45        {
46            "@id": "/phenotype-terms/MONDO_0004975/",
47            "status": "released",
48            "term_name": "Alzheimer disease"
49        }
50    ],
51    "donors": [
52        {
53            "@id": "/human-donors/IGVFDO0182KXUM/",
54            "accession": "IGVFDO0182KXUM",
55            "ethnicities": [
56                "European"
57            ],
58            "status": "preview"
59        },
60        {
61            "@id": "/human-donors/IGVFDO1997RFPJ/",
62            "accession": "IGVFDO1997RFPJ",
63            "ethnicities": [
64                "European"
65            ],
66            "status": "preview"
67        },
68        {
69            "@id": "/human-donors/IGVFDO2559GIIZ/",
70            "accession": "IGVFDO2559GIIZ",
71            "ethnicities": [
72                "European"
73            ],
74            "status": "preview"
75        },
76        {
77            "@id": "/human-donors/IGVFDO2928PSUK/",
78            "accession": "IGVFDO2928PSUK",
79            "ethnicities": [
80                "European"
81            ],
82            "status": "preview"
83        },
84        {
85            "@id": "/human-donors/IGVFDO4103FHPT/",
86            "accession": "IGVFDO4103FHPT",
87            "ethnicities": [
88                "European"
89            ],
90            "status": "preview"
91        },
92        {
93            "@id": "/human-donors/IGVFDO5228HTJC/",
94            "accession": "IGVFDO5228HTJC",
95            "ethnicities": [
96                "European"
97            ],
98            "status": "preview"
99        },
100        {
101            "@id": "/human-donors/IGVFDO5410JIJT/",
102            "accession": "IGVFDO5410JIJT",
103            "ethnicities": [
104                "European"
105            ],
106            "status": "preview"
107        },
108        {
109            "@id": "/human-donors/IGVFDO7315DYIP/",
110            "accession": "IGVFDO7315DYIP",
111            "ethnicities": [
112                "European"
113            ],
114            "status": "preview"
115        },
116        {
117            "@id": "/human-donors/IGVFDO8155MCUV/",
118            "accession": "IGVFDO8155MCUV",
119            "ethnicities": [
120                "European"
121            ],
122            "status": "preview"
123        },
124        {
125            "@id": "/human-donors/IGVFDO8458OKEW/",
126            "accession": "IGVFDO8458OKEW",
127            "ethnicities": [
128                "European"
129            ],
130            "status": "preview"
131        },
132        {
133            "@id": "/human-donors/IGVFDO8891KXRJ/",
134            "accession": "IGVFDO8891KXRJ",
135            "ethnicities": [
136                "European"
137            ],
138            "status": "preview"
139        },
140        {
141            "@id": "/human-donors/IGVFDO9247BEUS/",
142            "accession": "IGVFDO9247BEUS",
143            "ethnicities": [
144                "European"
145            ],
146            "status": "preview"
147        }
148    ],
149    "file_sets": [
150        {
151            "@id": "/measurement-sets/IGVFDS4582DKSD/",
152            "accession": "IGVFDS4582DKSD",
153            "aliases": [
154                "igvf:corces_measurementSet_X046_G1_ATAC"
155            ],
156            "file_set_type": "experimental data",
157            "lab": {
158                "title": "Ryan Corces, Gladstone Institute UCSF"
159            },
160            "preferred_assay_title": "10x multiome",
161            "status": "preview",
162            "summary": "single-nucleus ATAC-seq (10x multiome)"
163        },
164        {
165            "@id": "/measurement-sets/IGVFDS7160XHZT/",
166            "accession": "IGVFDS7160XHZT",
167            "aliases": [
168                "igvf:corces_measurementSet_X046_G1_RNA"
169            ],
170            "file_set_type": "experimental data",
171            "lab": {
172                "title": "Ryan Corces, Gladstone Institute UCSF"
173            },
174            "preferred_assay_title": "10x multiome",
175            "status": "preview",
176            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
177        }
178    ],
179    "institutional_certificates": [
180        {
181            "@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
182            "certificate_identifier": "IP115-05",
183            "controlled_access": false,
184            "status": "in progress"
185        }
186    ],
187    "lab": {
188        "@id": "/labs/ryan-corces/",
189        "title": "Ryan Corces, Gladstone Institute UCSF"
190    },
191    "modifications": [],
192    "multiplexed_in": [],
193    "multiplexed_samples": [
194        {
195            "@id": "/tissues/IGVFSM0545OFMV/",
196            "@type": [
197                "Tissue",
198                "Biosample",
199                "Sample",
200                "Item"
201            ],
202            "accession": "IGVFSM0545OFMV",
203            "disease_terms": [
204                {
205                    "@id": "/phenotype-terms/DOID_14330/",
206                    "status": "in progress",
207                    "term_name": "Parkinson's disease"
208                },
209                {
210                    "@id": "/phenotype-terms/DOID_9246/",
211                    "status": "in progress",
212                    "term_name": "cerebral amyloid angiopathy"
213                },
214                {
215                    "@id": "/phenotype-terms/DOID_0080832/",
216                    "status": "in progress",
217                    "term_name": "mild cognitive impairment"
218                }
219            ],
220            "donors": [
221                {
222                    "@id": "/human-donors/IGVFDO7315DYIP/",
223                    "accession": "IGVFDO7315DYIP",
224                    "status": "preview"
225                }
226            ],
227            "sample_terms": [
228                {
229                    "@id": "/sample-terms/UBERON_0001874/",
230                    "status": "preview",
231                    "term_name": "putamen"
232                }
233            ],
234            "status": "preview",
235            "summary": "Homo sapiens (female, 80 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
236        },
237        {
238            "@id": "/tissues/IGVFSM2062VLVF/",
239            "@type": [
240                "Tissue",
241                "Biosample",
242                "Sample",
243                "Item"
244            ],
245            "accession": "IGVFSM2062VLVF",
246            "donors": [
247                {
248                    "@id": "/human-donors/IGVFDO4103FHPT/",
249                    "accession": "IGVFDO4103FHPT",
250                    "status": "preview"
251                }
252            ],
253            "sample_terms": [
254                {
255                    "@id": "/sample-terms/UBERON_0001874/",
256                    "status": "preview",
257                    "term_name": "putamen"
258                }
259            ],
260            "status": "preview",
261            "summary": "Homo sapiens (male, 81 years) putamen tissue"
262        },
263        {
264            "@id": "/tissues/IGVFSM0342LLGL/",
265            "@type": [
266                "Tissue",
267                "Biosample",
268                "Sample",
269                "Item"
270            ],
271            "accession": "IGVFSM0342LLGL",
272            "disease_terms": [
273                {
274                    "@id": "/phenotype-terms/DOID_14330/",
275                    "status": "in progress",
276                    "term_name": "Parkinson's disease"
277                }
278            ],
279            "donors": [
280                {
281                    "@id": "/human-donors/IGVFDO0182KXUM/",
282                    "accession": "IGVFDO0182KXUM",
283                    "status": "preview"
284                }
285            ],
286            "sample_terms": [
287                {
288                    "@id": "/sample-terms/UBERON_0001874/",
289                    "status": "preview",
290                    "term_name": "putamen"
291                }
292            ],
293            "status": "preview",
294            "summary": "Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease"
295        },
296        {
297            "@id": "/tissues/IGVFSM8973ZZZR/",
298            "@type": [
299                "Tissue",
300                "Biosample",
301                "Sample",
302                "Item"
303            ],
304            "accession": "IGVFSM8973ZZZR",
305            "disease_terms": [
306                {
307                    "@id": "/phenotype-terms/MONDO_0004975/",
308                    "status": "released",
309                    "term_name": "Alzheimer disease"
310                },
311                {
312                    "@id": "/phenotype-terms/DOID_14330/",
313                    "status": "in progress",
314                    "term_name": "Parkinson's disease"
315                },
316                {
317                    "@id": "/phenotype-terms/DOID_9246/",
318                    "status": "in progress",
319                    "term_name": "cerebral amyloid angiopathy"
320                },
321                {
322                    "@id": "/phenotype-terms/DOID_2377/",
323                    "status": "in progress",
324                    "term_name": "multiple sclerosis"
325                }
326            ],
327            "donors": [
328                {
329                    "@id": "/human-donors/IGVFDO8155MCUV/",
330                    "accession": "IGVFDO8155MCUV",
331                    "status": "preview"
332                }
333            ],
334            "sample_terms": [
335                {
336                    "@id": "/sample-terms/UBERON_0002740/",
337                    "status": "preview",
338                    "term_name": "posterior cingulate gyrus"
339                }
340            ],
341            "status": "preview",
342            "summary": "Homo sapiens (female, 82 years) posterior cingulate gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis"
343        },
344        {
345            "@id": "/tissues/IGVFSM1812SSCI/",
346            "@type": [
347                "Tissue",
348                "Biosample",
349                "Sample",
350                "Item"
351            ],
352            "accession": "IGVFSM1812SSCI",
353            "donors": [
354                {
355                    "@id": "/human-donors/IGVFDO8891KXRJ/",
356                    "accession": "IGVFDO8891KXRJ",
357                    "status": "preview"
358                }
359            ],
360            "sample_terms": [
361                {
362                    "@id": "/sample-terms/UBERON_0002740/",
363                    "status": "preview",
364                    "term_name": "posterior cingulate gyrus"
365                }
366            ],
367            "status": "preview",
368            "summary": "Homo sapiens (female, 52 years) posterior cingulate gyrus tissue"
369        },
370        {
371            "@id": "/tissues/IGVFSM7111NHWJ/",
372            "@type": [
373                "Tissue",
374                "Biosample",
375                "Sample",
376                "Item"
377            ],
378            "accession": "IGVFSM7111NHWJ",
379            "disease_terms": [
380                {
381                    "@id": "/phenotype-terms/DOID_14330/",
382                    "status": "in progress",
383                    "term_name": "Parkinson's disease"
384                },
385                {
386                    "@id": "/phenotype-terms/DOID_9246/",
387                    "status": "in progress",
388                    "term_name": "cerebral amyloid angiopathy"
389                }
390            ],
391            "donors": [
392                {
393                    "@id": "/human-donors/IGVFDO5410JIJT/",
394                    "accession": "IGVFDO5410JIJT",
395                    "status": "preview"
396                }
397            ],
398            "sample_terms": [
399                {
400                    "@id": "/sample-terms/UBERON_0002771/",
401                    "status": "preview",
402                    "term_name": "middle temporal gyrus"
403                }
404            ],
405            "status": "preview",
406            "summary": "Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
407        },
408        {
409            "@id": "/tissues/IGVFSM0369CDVZ/",
410            "@type": [
411                "Tissue",
412                "Biosample",
413                "Sample",
414                "Item"
415            ],
416            "accession": "IGVFSM0369CDVZ",
417            "donors": [
418                {
419                    "@id": "/human-donors/IGVFDO2928PSUK/",
420                    "accession": "IGVFDO2928PSUK",
421                    "status": "preview"
422                }
423            ],
424            "sample_terms": [
425                {
426                    "@id": "/sample-terms/UBERON_0002771/",
427                    "status": "preview",
428                    "term_name": "middle temporal gyrus"
429                }
430            ],
431            "status": "preview",
432            "summary": "Homo sapiens (male, 53 years) middle temporal gyrus tissue"
433        },
434        {
435            "@id": "/tissues/IGVFSM8290UTID/",
436            "@type": [
437                "Tissue",
438                "Biosample",
439                "Sample",
440                "Item"
441            ],
442            "accession": "IGVFSM8290UTID",
443            "disease_terms": [
444                {
445                    "@id": "/phenotype-terms/DOID_14330/",
446                    "status": "in progress",
447                    "term_name": "Parkinson's disease"
448                },
449                {
450                    "@id": "/phenotype-terms/DOID_0080832/",
451                    "status": "in progress",
452                    "term_name": "mild cognitive impairment"
453                }
454            ],
455            "donors": [
456                {
457                    "@id": "/human-donors/IGVFDO8458OKEW/",
458                    "accession": "IGVFDO8458OKEW",
459                    "status": "preview"
460                }
461            ],
462            "sample_terms": [
463                {
464                    "@id": "/sample-terms/UBERON_0002771/",
465                    "status": "preview",
466                    "term_name": "middle temporal gyrus"
467                }
468            ],
469            "status": "preview",
470            "summary": "Homo sapiens (male, 78 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
471        },
472        {
473            "@id": "/tissues/IGVFSM9010PAET/",
474            "@type": [
475                "Tissue",
476                "Biosample",
477                "Sample",
478                "Item"
479            ],
480            "accession": "IGVFSM9010PAET",
481            "donors": [
482                {
483                    "@id": "/human-donors/IGVFDO1997RFPJ/",
484                    "accession": "IGVFDO1997RFPJ",
485                    "status": "preview"
486                }
487            ],
488            "sample_terms": [
489                {
490                    "@id": "/sample-terms/UBERON_0002129/",
491                    "status": "preview",
492                    "term_name": "cerebellar cortex"
493                }
494            ],
495            "status": "preview",
496            "summary": "Homo sapiens (male, 73 years) cerebellar cortex tissue"
497        },
498        {
499            "@id": "/tissues/IGVFSM7421LZWB/",
500            "@type": [
501                "Tissue",
502                "Biosample",
503                "Sample",
504                "Item"
505            ],
506            "accession": "IGVFSM7421LZWB",
507            "disease_terms": [
508                {
509                    "@id": "/phenotype-terms/DOID_14330/",
510                    "status": "in progress",
511                    "term_name": "Parkinson's disease"
512                }
513            ],
514            "donors": [
515                {
516                    "@id": "/human-donors/IGVFDO5228HTJC/",
517                    "accession": "IGVFDO5228HTJC",
518                    "status": "preview"
519                }
520            ],
521            "sample_terms": [
522                {
523                    "@id": "/sample-terms/UBERON_0002129/",
524                    "status": "preview",
525                    "term_name": "cerebellar cortex"
526                }
527            ],
528            "status": "preview",
529            "summary": "Homo sapiens (female, 86 years) cerebellar cortex tissue associated with Parkinson's disease"
530        },
531        {
532            "@id": "/tissues/IGVFSM3154NSAO/",
533            "@type": [
534                "Tissue",
535                "Biosample",
536                "Sample",
537                "Item"
538            ],
539            "accession": "IGVFSM3154NSAO",
540            "disease_terms": [
541                {
542                    "@id": "/phenotype-terms/DOID_14330/",
543                    "status": "in progress",
544                    "term_name": "Parkinson's disease"
545                },
546                {
547                    "@id": "/phenotype-terms/DOID_9246/",
548                    "status": "in progress",
549                    "term_name": "cerebral amyloid angiopathy"
550                }
551            ],
552            "donors": [
553                {
554                    "@id": "/human-donors/IGVFDO9247BEUS/",
555                    "accession": "IGVFDO9247BEUS",
556                    "status": "preview"
557                }
558            ],
559            "sample_terms": [
560                {
561                    "@id": "/sample-terms/UBERON_0002129/",
562                    "status": "preview",
563                    "term_name": "cerebellar cortex"
564                }
565            ],
566            "status": "preview",
567            "summary": "Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
568        },
569        {
570            "@id": "/tissues/IGVFSM7192OHQL/",
571            "@type": [
572                "Tissue",
573                "Biosample",
574                "Sample",
575                "Item"
576            ],
577            "accession": "IGVFSM7192OHQL",
578            "disease_terms": [
579                {
580                    "@id": "/phenotype-terms/DOID_14330/",
581                    "status": "in progress",
582                    "term_name": "Parkinson's disease"
583                }
584            ],
585            "donors": [
586                {
587                    "@id": "/human-donors/IGVFDO2559GIIZ/",
588                    "accession": "IGVFDO2559GIIZ",
589                    "status": "preview"
590                }
591            ],
592            "sample_terms": [
593                {
594                    "@id": "/sample-terms/UBERON_0002038/",
595                    "status": "preview",
596                    "term_name": "substantia nigra"
597                }
598            ],
599            "status": "preview",
600            "summary": "Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease"
601        }
602    ],
603    "multiplexing_methods": [
604        "genetic"
605    ],
606    "origin_of": [],
607    "sample_terms": [
608        {
609            "@id": "/sample-terms/UBERON_0001874/",
610            "status": "preview",
611            "term_name": "putamen"
612        },
613        {
614            "@id": "/sample-terms/UBERON_0002038/",
615            "status": "preview",
616            "term_name": "substantia nigra"
617        },
618        {
619            "@id": "/sample-terms/UBERON_0002129/",
620            "status": "preview",
621            "term_name": "cerebellar cortex"
622        },
623        {
624            "@id": "/sample-terms/UBERON_0002740/",
625            "status": "preview",
626            "term_name": "posterior cingulate gyrus"
627        },
628        {
629            "@id": "/sample-terms/UBERON_0002771/",
630            "status": "preview",
631            "term_name": "middle temporal gyrus"
632        }
633    ],
634    "schema_version": "10",
635    "sorted_fractions": [],
636    "sources": [
637        {
638            "@id": "/sources/banner-health/",
639            "status": "released",
640            "title": "Banner Health"
641        }
642    ],
643    "status": "preview",
644    "submitted_by": {
645        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
646        "title": "Ryan Corces"
647    },
648    "summary": "multiplexed sample: Homo sapiens (female, 78 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 53 years) middle temporal gyrus tissue; ... and 10 more samples",
649    "taxa": "Homo sapiens",
650    "treatments": [],
651    "uuid": "fb7d2104-24b2-4c27-9ebe-3ec69db4ce4a",
652    "virtual": false
653}