{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM2512OHNK/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2512OHNK",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf9_10x2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM7471WKWP](/in-vitro-systems/IGVFSM7471WKWP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM7471WKWP/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5428BTXA](/in-vitro-systems/IGVFSM5428BTXA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5428BTXA/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9206DZWY](/in-vitro-systems/IGVFSM9206DZWY/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9206DZWY/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4594ZWFX](/in-vitro-systems/IGVFSM4594ZWFX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4594ZWFX/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM2512OHNK](/multiplexed-samples/IGVFSM2512OHNK/) has in progress subobject tabular file [IGVFFI8866FURX](/tabular-files/IGVFFI8866FURX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM2512OHNK/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM2512OHNK](/multiplexed-samples/IGVFSM2512OHNK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM2512OHNK/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM5879GUML](/in-vitro-systems/IGVFSM5879GUML/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM5879GUML/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8691LAUK](/in-vitro-systems/IGVFSM8691LAUK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8691LAUK/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM9641WFAG](/in-vitro-systems/IGVFSM9641WFAG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM9641WFAG/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI8866FURX/",
"biomarkers": [],
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2024-07-23T20:58:31.906354+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"ethnicities": [
"African American"
],
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4370KUWU/",
"accession": "IGVFDS4370KUWU",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf9_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS3446FAJU/",
"accession": "IGVFDS3446FAJU",
"aliases": [
"ansuman-satpathy:multiseq_igvf9_10x2"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS2108XESQ/",
"accession": "IGVFDS2108XESQ",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf9_10x2"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS6435ALNY/",
"accession": "IGVFDS6435ALNY",
"aliases": [
"ansuman-satpathy:igvf9_analysis_set_10x2"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
"certificate_identifier": "IP115-22",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "released"
}
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM7471WKWP/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7471WKWP",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen"
},
{
"@id": "/in-vitro-systems/IGVFSM4594ZWFX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4594ZWFX",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day"
},
{
"@id": "/in-vitro-systems/IGVFSM5879GUML/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5879GUML",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days"
},
{
"@id": "/in-vitro-systems/IGVFSM9641WFAG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9641WFAG",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 3 days"
},
{
"@id": "/in-vitro-systems/IGVFSM8691LAUK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8691LAUK",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
},
{
"@id": "/in-vitro-systems/IGVFSM5428BTXA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5428BTXA",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days"
},
{
"@id": "/in-vitro-systems/IGVFSM9206DZWY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9206DZWY",
"donors": [
{
"@id": "/human-donors/IGVFDO1718HCES/",
"accession": "IGVFDO1718HCES",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"status": "released",
"summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
}
],
"multiplexing_methods": [
"barcode based"
],
"notes": "This object's multiplexing_methods has been set to barcode based by an upgrade. Please make sure it is correct before removing the notes.",
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-22T00:38:14.640177+00:00",
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/harinder-singh/",
"status": "current",
"title": "Harinder Singh, University of Pittsburgh"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "1bf197e3-1b6e-4434-acb3-18bc94d5b131",
"virtual": false
}