peripheral blood mononuclear cell — IGVFSM2417ESWC

preview
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM2417ESWC/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM2417ESWC",
10    "aliases": [
11        "jimmie-ye:XX14-SC3"
12    ],
13    "audit": {
14        "INTERNAL_ACTION": [
15            {
16                "category": "mismatched status",
17                "detail": "Preview multiplexed sample [IGVFSM2417ESWC](/multiplexed-samples/IGVFSM2417ESWC/) has in progress subobject tabular file [IGVFFI0804QOML](/tabular-files/IGVFFI0804QOML/).",
18                "level": 30,
19                "level_name": "INTERNAL_ACTION",
20                "name": "audit_item_status",
21                "path": "/multiplexed-samples/IGVFSM2417ESWC/"
22            }
23        ]
24    },
25    "award": {
26        "@id": "/awards/HG012076/",
27        "component": "mapping"
28    },
29    "barcode_map": "/tabular-files/IGVFFI0804QOML/",
30    "biomarkers": [],
31    "classifications": [
32        "primary cell",
33        "multiplexed sample"
34    ],
35    "creation_timestamp": "2025-03-07T23:18:57.291684+00:00",
36    "description": "Multiplexed PBMC nuclei",
37    "disease_terms": [],
38    "donors": [
39        {
40            "@id": "/human-donors/IGVFDO0091WOLC/",
41            "accession": "IGVFDO0091WOLC",
42            "ethnicities": [
43                "European"
44            ],
45            "status": "preview"
46        },
47        {
48            "@id": "/human-donors/IGVFDO0394QZIU/",
49            "accession": "IGVFDO0394QZIU",
50            "ethnicities": [
51                "Asian"
52            ],
53            "status": "preview"
54        },
55        {
56            "@id": "/human-donors/IGVFDO0468PVKJ/",
57            "accession": "IGVFDO0468PVKJ",
58            "ethnicities": [
59                "Asian"
60            ],
61            "status": "preview"
62        },
63        {
64            "@id": "/human-donors/IGVFDO0544ZLUX/",
65            "accession": "IGVFDO0544ZLUX",
66            "ethnicities": [
67                "Asian"
68            ],
69            "status": "preview"
70        },
71        {
72            "@id": "/human-donors/IGVFDO2089JEFB/",
73            "accession": "IGVFDO2089JEFB",
74            "ethnicities": [
75                "Asian"
76            ],
77            "status": "preview"
78        },
79        {
80            "@id": "/human-donors/IGVFDO3270LSDU/",
81            "accession": "IGVFDO3270LSDU",
82            "ethnicities": [
83                "European"
84            ],
85            "status": "preview"
86        },
87        {
88            "@id": "/human-donors/IGVFDO3573HTIO/",
89            "accession": "IGVFDO3573HTIO",
90            "ethnicities": [
91                "African American"
92            ],
93            "status": "preview"
94        },
95        {
96            "@id": "/human-donors/IGVFDO3920USMS/",
97            "accession": "IGVFDO3920USMS",
98            "ethnicities": [
99                "European"
100            ],
101            "status": "preview"
102        },
103        {
104            "@id": "/human-donors/IGVFDO4363YRSV/",
105            "accession": "IGVFDO4363YRSV",
106            "ethnicities": [
107                "Asian"
108            ],
109            "status": "preview"
110        },
111        {
112            "@id": "/human-donors/IGVFDO4410IVUC/",
113            "accession": "IGVFDO4410IVUC",
114            "ethnicities": [
115                "European"
116            ],
117            "status": "preview"
118        },
119        {
120            "@id": "/human-donors/IGVFDO5831DKJT/",
121            "accession": "IGVFDO5831DKJT",
122            "ethnicities": [
123                "African American"
124            ],
125            "status": "preview"
126        },
127        {
128            "@id": "/human-donors/IGVFDO6041DLFI/",
129            "accession": "IGVFDO6041DLFI",
130            "ethnicities": [
131                "Indigenous in North America"
132            ],
133            "status": "preview"
134        },
135        {
136            "@id": "/human-donors/IGVFDO7229GQGF/",
137            "accession": "IGVFDO7229GQGF",
138            "ethnicities": [
139                "European"
140            ],
141            "status": "preview"
142        },
143        {
144            "@id": "/human-donors/IGVFDO7340NFUW/",
145            "accession": "IGVFDO7340NFUW",
146            "ethnicities": [
147                "Indigenous in North America"
148            ],
149            "status": "preview"
150        },
151        {
152            "@id": "/human-donors/IGVFDO7477OHFR/",
153            "accession": "IGVFDO7477OHFR",
154            "ethnicities": [
155                "African American"
156            ],
157            "status": "preview"
158        },
159        {
160            "@id": "/human-donors/IGVFDO7678FIRH/",
161            "accession": "IGVFDO7678FIRH",
162            "ethnicities": [
163                "Indigenous in North America"
164            ],
165            "status": "preview"
166        },
167        {
168            "@id": "/human-donors/IGVFDO8172HGQW/",
169            "accession": "IGVFDO8172HGQW",
170            "ethnicities": [
171                "Indigenous in North America"
172            ],
173            "status": "preview"
174        },
175        {
176            "@id": "/human-donors/IGVFDO8283BHRN/",
177            "accession": "IGVFDO8283BHRN",
178            "ethnicities": [
179                "European"
180            ],
181            "status": "preview"
182        },
183        {
184            "@id": "/human-donors/IGVFDO9496ZYBE/",
185            "accession": "IGVFDO9496ZYBE",
186            "ethnicities": [
187                "African American"
188            ],
189            "status": "preview"
190        },
191        {
192            "@id": "/human-donors/IGVFDO9760DKTN/",
193            "accession": "IGVFDO9760DKTN",
194            "ethnicities": [
195                "African American"
196            ],
197            "status": "preview"
198        }
199    ],
200    "file_sets": [
201        {
202            "@id": "/measurement-sets/IGVFDS5055FBCY/",
203            "accession": "IGVFDS5055FBCY",
204            "aliases": [
205                "jimmie-ye:XX14-SC3_snATAC"
206            ],
207            "file_set_type": "experimental data",
208            "lab": {
209                "title": "Jimmie Ye, UCSF"
210            },
211            "preferred_assay_title": "10x multiome",
212            "status": "preview",
213            "summary": "single-nucleus ATAC-seq (10x multiome)"
214        },
215        {
216            "@id": "/measurement-sets/IGVFDS8327GJYL/",
217            "accession": "IGVFDS8327GJYL",
218            "aliases": [
219                "jimmie-ye:XX14-SC3_snRNA"
220            ],
221            "file_set_type": "experimental data",
222            "lab": {
223                "title": "Jimmie Ye, UCSF"
224            },
225            "preferred_assay_title": "10x multiome",
226            "status": "preview",
227            "summary": "single-nucleus RNA sequencing assay (10x multiome)"
228        },
229        {
230            "@id": "/analysis-sets/IGVFDS8583SWJP/",
231            "accession": "IGVFDS8583SWJP",
232            "aliases": [
233                "jimmie-ye:XX14-SC3-analysis-set"
234            ],
235            "file_set_type": "intermediate analysis",
236            "lab": {
237                "title": "Jimmie Ye, UCSF"
238            },
239            "status": "in progress",
240            "summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
241        }
242    ],
243    "institutional_certificates": [
244        {
245            "@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
246            "certificate_identifier": "IP115-26",
247            "controlled_access": true,
248            "data_use_limitation": "GRU",
249            "data_use_limitation_summary": "GRU",
250            "status": "in progress"
251        }
252    ],
253    "lab": {
254        "@id": "/labs/jimmie-ye/",
255        "title": "Jimmie Ye, UCSF"
256    },
257    "modifications": [],
258    "multiplexed_in": [],
259    "multiplexed_samples": [
260        {
261            "@id": "/primary-cells/IGVFSM3036PZVE/",
262            "@type": [
263                "PrimaryCell",
264                "Biosample",
265                "Sample",
266                "Item"
267            ],
268            "accession": "IGVFSM3036PZVE",
269            "donors": [
270                {
271                    "@id": "/human-donors/IGVFDO9760DKTN/",
272                    "accession": "IGVFDO9760DKTN",
273                    "status": "preview"
274                }
275            ],
276            "sample_terms": [
277                {
278                    "@id": "/sample-terms/CL_2000001/",
279                    "status": "released",
280                    "term_name": "peripheral blood mononuclear cell"
281                }
282            ],
283            "status": "preview",
284            "summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
285        },
286        {
287            "@id": "/primary-cells/IGVFSM1268BKWM/",
288            "@type": [
289                "PrimaryCell",
290                "Biosample",
291                "Sample",
292                "Item"
293            ],
294            "accession": "IGVFSM1268BKWM",
295            "donors": [
296                {
297                    "@id": "/human-donors/IGVFDO3920USMS/",
298                    "accession": "IGVFDO3920USMS",
299                    "status": "preview"
300                }
301            ],
302            "sample_terms": [
303                {
304                    "@id": "/sample-terms/CL_2000001/",
305                    "status": "released",
306                    "term_name": "peripheral blood mononuclear cell"
307                }
308            ],
309            "status": "preview",
310            "summary": "Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell"
311        },
312        {
313            "@id": "/primary-cells/IGVFSM1689JZCP/",
314            "@type": [
315                "PrimaryCell",
316                "Biosample",
317                "Sample",
318                "Item"
319            ],
320            "accession": "IGVFSM1689JZCP",
321            "donors": [
322                {
323                    "@id": "/human-donors/IGVFDO5831DKJT/",
324                    "accession": "IGVFDO5831DKJT",
325                    "status": "preview"
326                }
327            ],
328            "sample_terms": [
329                {
330                    "@id": "/sample-terms/CL_2000001/",
331                    "status": "released",
332                    "term_name": "peripheral blood mononuclear cell"
333                }
334            ],
335            "status": "preview",
336            "summary": "Homo sapiens (male, 49.0 years) peripheral blood mononuclear cell"
337        },
338        {
339            "@id": "/primary-cells/IGVFSM9745PWRC/",
340            "@type": [
341                "PrimaryCell",
342                "Biosample",
343                "Sample",
344                "Item"
345            ],
346            "accession": "IGVFSM9745PWRC",
347            "donors": [
348                {
349                    "@id": "/human-donors/IGVFDO4410IVUC/",
350                    "accession": "IGVFDO4410IVUC",
351                    "status": "preview"
352                }
353            ],
354            "sample_terms": [
355                {
356                    "@id": "/sample-terms/CL_2000001/",
357                    "status": "released",
358                    "term_name": "peripheral blood mononuclear cell"
359                }
360            ],
361            "status": "preview",
362            "summary": "Homo sapiens (female, 22.80252922 years) peripheral blood mononuclear cell"
363        },
364        {
365            "@id": "/primary-cells/IGVFSM4562ENIF/",
366            "@type": [
367                "PrimaryCell",
368                "Biosample",
369                "Sample",
370                "Item"
371            ],
372            "accession": "IGVFSM4562ENIF",
373            "donors": [
374                {
375                    "@id": "/human-donors/IGVFDO4363YRSV/",
376                    "accession": "IGVFDO4363YRSV",
377                    "status": "preview"
378                }
379            ],
380            "sample_terms": [
381                {
382                    "@id": "/sample-terms/CL_2000001/",
383                    "status": "released",
384                    "term_name": "peripheral blood mononuclear cell"
385                }
386            ],
387            "status": "preview",
388            "summary": "Homo sapiens (female, 21.0 years) peripheral blood mononuclear cell"
389        },
390        {
391            "@id": "/primary-cells/IGVFSM6129KFHK/",
392            "@type": [
393                "PrimaryCell",
394                "Biosample",
395                "Sample",
396                "Item"
397            ],
398            "accession": "IGVFSM6129KFHK",
399            "donors": [
400                {
401                    "@id": "/human-donors/IGVFDO3270LSDU/",
402                    "accession": "IGVFDO3270LSDU",
403                    "status": "preview"
404                }
405            ],
406            "sample_terms": [
407                {
408                    "@id": "/sample-terms/CL_2000001/",
409                    "status": "released",
410                    "term_name": "peripheral blood mononuclear cell"
411                }
412            ],
413            "status": "preview",
414            "summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
415        },
416        {
417            "@id": "/primary-cells/IGVFSM8179JZLQ/",
418            "@type": [
419                "PrimaryCell",
420                "Biosample",
421                "Sample",
422                "Item"
423            ],
424            "accession": "IGVFSM8179JZLQ",
425            "donors": [
426                {
427                    "@id": "/human-donors/IGVFDO9496ZYBE/",
428                    "accession": "IGVFDO9496ZYBE",
429                    "status": "preview"
430                }
431            ],
432            "sample_terms": [
433                {
434                    "@id": "/sample-terms/CL_2000001/",
435                    "status": "released",
436                    "term_name": "peripheral blood mononuclear cell"
437                }
438            ],
439            "status": "preview",
440            "summary": "Homo sapiens (female, 50.0 years) peripheral blood mononuclear cell"
441        },
442        {
443            "@id": "/primary-cells/IGVFSM9720SHBJ/",
444            "@type": [
445                "PrimaryCell",
446                "Biosample",
447                "Sample",
448                "Item"
449            ],
450            "accession": "IGVFSM9720SHBJ",
451            "donors": [
452                {
453                    "@id": "/human-donors/IGVFDO0468PVKJ/",
454                    "accession": "IGVFDO0468PVKJ",
455                    "status": "preview"
456                }
457            ],
458            "sample_terms": [
459                {
460                    "@id": "/sample-terms/CL_2000001/",
461                    "status": "released",
462                    "term_name": "peripheral blood mononuclear cell"
463                }
464            ],
465            "status": "preview",
466            "summary": "Homo sapiens (male, 27.0 years) peripheral blood mononuclear cell"
467        },
468        {
469            "@id": "/primary-cells/IGVFSM5635TPPN/",
470            "@type": [
471                "PrimaryCell",
472                "Biosample",
473                "Sample",
474                "Item"
475            ],
476            "accession": "IGVFSM5635TPPN",
477            "donors": [
478                {
479                    "@id": "/human-donors/IGVFDO7340NFUW/",
480                    "accession": "IGVFDO7340NFUW",
481                    "status": "preview"
482                }
483            ],
484            "sample_terms": [
485                {
486                    "@id": "/sample-terms/CL_2000001/",
487                    "status": "released",
488                    "term_name": "peripheral blood mononuclear cell"
489                }
490            ],
491            "status": "preview",
492            "summary": "Homo sapiens (male, 48.0 years) peripheral blood mononuclear cell"
493        },
494        {
495            "@id": "/primary-cells/IGVFSM0310HMRO/",
496            "@type": [
497                "PrimaryCell",
498                "Biosample",
499                "Sample",
500                "Item"
501            ],
502            "accession": "IGVFSM0310HMRO",
503            "donors": [
504                {
505                    "@id": "/human-donors/IGVFDO3573HTIO/",
506                    "accession": "IGVFDO3573HTIO",
507                    "status": "preview"
508                }
509            ],
510            "sample_terms": [
511                {
512                    "@id": "/sample-terms/CL_2000001/",
513                    "status": "released",
514                    "term_name": "peripheral blood mononuclear cell"
515                }
516            ],
517            "status": "preview",
518            "summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
519        },
520        {
521            "@id": "/primary-cells/IGVFSM7717FBOT/",
522            "@type": [
523                "PrimaryCell",
524                "Biosample",
525                "Sample",
526                "Item"
527            ],
528            "accession": "IGVFSM7717FBOT",
529            "donors": [
530                {
531                    "@id": "/human-donors/IGVFDO7477OHFR/",
532                    "accession": "IGVFDO7477OHFR",
533                    "status": "preview"
534                }
535            ],
536            "sample_terms": [
537                {
538                    "@id": "/sample-terms/CL_2000001/",
539                    "status": "released",
540                    "term_name": "peripheral blood mononuclear cell"
541                }
542            ],
543            "status": "preview",
544            "summary": "Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell"
545        },
546        {
547            "@id": "/primary-cells/IGVFSM2152YSPZ/",
548            "@type": [
549                "PrimaryCell",
550                "Biosample",
551                "Sample",
552                "Item"
553            ],
554            "accession": "IGVFSM2152YSPZ",
555            "donors": [
556                {
557                    "@id": "/human-donors/IGVFDO0091WOLC/",
558                    "accession": "IGVFDO0091WOLC",
559                    "status": "preview"
560                }
561            ],
562            "sample_terms": [
563                {
564                    "@id": "/sample-terms/CL_2000001/",
565                    "status": "released",
566                    "term_name": "peripheral blood mononuclear cell"
567                }
568            ],
569            "status": "preview",
570            "summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
571        },
572        {
573            "@id": "/primary-cells/IGVFSM3342PWJR/",
574            "@type": [
575                "PrimaryCell",
576                "Biosample",
577                "Sample",
578                "Item"
579            ],
580            "accession": "IGVFSM3342PWJR",
581            "donors": [
582                {
583                    "@id": "/human-donors/IGVFDO6041DLFI/",
584                    "accession": "IGVFDO6041DLFI",
585                    "status": "preview"
586                }
587            ],
588            "sample_terms": [
589                {
590                    "@id": "/sample-terms/CL_2000001/",
591                    "status": "released",
592                    "term_name": "peripheral blood mononuclear cell"
593                }
594            ],
595            "status": "preview",
596            "summary": "Homo sapiens (female, 35.0 years) peripheral blood mononuclear cell"
597        },
598        {
599            "@id": "/primary-cells/IGVFSM6841HVQV/",
600            "@type": [
601                "PrimaryCell",
602                "Biosample",
603                "Sample",
604                "Item"
605            ],
606            "accession": "IGVFSM6841HVQV",
607            "donors": [
608                {
609                    "@id": "/human-donors/IGVFDO0394QZIU/",
610                    "accession": "IGVFDO0394QZIU",
611                    "status": "preview"
612                }
613            ],
614            "sample_terms": [
615                {
616                    "@id": "/sample-terms/CL_2000001/",
617                    "status": "released",
618                    "term_name": "peripheral blood mononuclear cell"
619                }
620            ],
621            "status": "preview",
622            "summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
623        },
624        {
625            "@id": "/primary-cells/IGVFSM9220MXSK/",
626            "@type": [
627                "PrimaryCell",
628                "Biosample",
629                "Sample",
630                "Item"
631            ],
632            "accession": "IGVFSM9220MXSK",
633            "donors": [
634                {
635                    "@id": "/human-donors/IGVFDO7678FIRH/",
636                    "accession": "IGVFDO7678FIRH",
637                    "status": "preview"
638                }
639            ],
640            "sample_terms": [
641                {
642                    "@id": "/sample-terms/CL_2000001/",
643                    "status": "released",
644                    "term_name": "peripheral blood mononuclear cell"
645                }
646            ],
647            "status": "preview",
648            "summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
649        },
650        {
651            "@id": "/primary-cells/IGVFSM3983YWCJ/",
652            "@type": [
653                "PrimaryCell",
654                "Biosample",
655                "Sample",
656                "Item"
657            ],
658            "accession": "IGVFSM3983YWCJ",
659            "donors": [
660                {
661                    "@id": "/human-donors/IGVFDO8172HGQW/",
662                    "accession": "IGVFDO8172HGQW",
663                    "status": "preview"
664                }
665            ],
666            "sample_terms": [
667                {
668                    "@id": "/sample-terms/CL_2000001/",
669                    "status": "released",
670                    "term_name": "peripheral blood mononuclear cell"
671                }
672            ],
673            "status": "preview",
674            "summary": "Homo sapiens (female, 31.0 years) peripheral blood mononuclear cell"
675        },
676        {
677            "@id": "/primary-cells/IGVFSM5545RYQR/",
678            "@type": [
679                "PrimaryCell",
680                "Biosample",
681                "Sample",
682                "Item"
683            ],
684            "accession": "IGVFSM5545RYQR",
685            "donors": [
686                {
687                    "@id": "/human-donors/IGVFDO0544ZLUX/",
688                    "accession": "IGVFDO0544ZLUX",
689                    "status": "preview"
690                }
691            ],
692            "sample_terms": [
693                {
694                    "@id": "/sample-terms/CL_2000001/",
695                    "status": "released",
696                    "term_name": "peripheral blood mononuclear cell"
697                }
698            ],
699            "status": "preview",
700            "summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
701        },
702        {
703            "@id": "/primary-cells/IGVFSM7399TNJK/",
704            "@type": [
705                "PrimaryCell",
706                "Biosample",
707                "Sample",
708                "Item"
709            ],
710            "accession": "IGVFSM7399TNJK",
711            "donors": [
712                {
713                    "@id": "/human-donors/IGVFDO2089JEFB/",
714                    "accession": "IGVFDO2089JEFB",
715                    "status": "preview"
716                }
717            ],
718            "sample_terms": [
719                {
720                    "@id": "/sample-terms/CL_2000001/",
721                    "status": "released",
722                    "term_name": "peripheral blood mononuclear cell"
723                }
724            ],
725            "status": "preview",
726            "summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
727        },
728        {
729            "@id": "/primary-cells/IGVFSM6990OSDW/",
730            "@type": [
731                "PrimaryCell",
732                "Biosample",
733                "Sample",
734                "Item"
735            ],
736            "accession": "IGVFSM6990OSDW",
737            "donors": [
738                {
739                    "@id": "/human-donors/IGVFDO8283BHRN/",
740                    "accession": "IGVFDO8283BHRN",
741                    "status": "preview"
742                }
743            ],
744            "sample_terms": [
745                {
746                    "@id": "/sample-terms/CL_2000001/",
747                    "status": "released",
748                    "term_name": "peripheral blood mononuclear cell"
749                }
750            ],
751            "status": "preview",
752            "summary": "Homo sapiens (male, 44.0 years) peripheral blood mononuclear cell"
753        },
754        {
755            "@id": "/primary-cells/IGVFSM5860AAUE/",
756            "@type": [
757                "PrimaryCell",
758                "Biosample",
759                "Sample",
760                "Item"
761            ],
762            "accession": "IGVFSM5860AAUE",
763            "donors": [
764                {
765                    "@id": "/human-donors/IGVFDO7229GQGF/",
766                    "accession": "IGVFDO7229GQGF",
767                    "status": "preview"
768                }
769            ],
770            "sample_terms": [
771                {
772                    "@id": "/sample-terms/CL_2000001/",
773                    "status": "released",
774                    "term_name": "peripheral blood mononuclear cell"
775                }
776            ],
777            "status": "preview",
778            "summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
779        }
780    ],
781    "multiplexing_methods": [
782        "barcode based"
783    ],
784    "origin_of": [],
785    "sample_terms": [
786        {
787            "@id": "/sample-terms/CL_2000001/",
788            "status": "released",
789            "term_name": "peripheral blood mononuclear cell"
790        }
791    ],
792    "schema_version": "10",
793    "sorted_fractions": [],
794    "sources": [
795        {
796            "@id": "/labs/jimmie-ye/",
797            "status": "current",
798            "title": "Jimmie Ye, UCSF"
799        }
800    ],
801    "status": "preview",
802    "submitted_by": {
803        "@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
804        "title": "Marcus Alvarez"
805    },
806    "summary": "multiplexed sample: Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
807    "taxa": "Homo sapiens",
808    "treatments": [],
809    "uuid": "41b1743e-49fb-4494-a5fd-235b30c6fce4",
810    "virtual": false
811}