{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM2228XCXF/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2228XCXF",
"aliases": [
"jimmie-ye:XX6-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM2228XCXF](/multiplexed-samples/IGVFSM2228XCXF/) has in progress subobject tabular file [IGVFFI1588CGAR](/tabular-files/IGVFFI1588CGAR/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM2228XCXF/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI1588CGAR/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:27.451078+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0059PRQY/",
"accession": "IGVFDO0059PRQY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0744XMPI/",
"accession": "IGVFDO0744XMPI",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0777MUKN/",
"accession": "IGVFDO0777MUKN",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1097IKXR/",
"accession": "IGVFDO1097IKXR",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1787OLPT/",
"accession": "IGVFDO1787OLPT",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1973NMET/",
"accession": "IGVFDO1973NMET",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2352VYLK/",
"accession": "IGVFDO2352VYLK",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3702UVDF/",
"accession": "IGVFDO3702UVDF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3832NYGT/",
"accession": "IGVFDO3832NYGT",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4801VLZE/",
"accession": "IGVFDO4801VLZE",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5152JBHA/",
"accession": "IGVFDO5152JBHA",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5736PQLJ/",
"accession": "IGVFDO5736PQLJ",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5763KEVL/",
"accession": "IGVFDO5763KEVL",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6411OGIR/",
"accession": "IGVFDO6411OGIR",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6428YYEA/",
"accession": "IGVFDO6428YYEA",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7141VYUU/",
"accession": "IGVFDO7141VYUU",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8861CLWQ/",
"accession": "IGVFDO8861CLWQ",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9258XPYT/",
"accession": "IGVFDO9258XPYT",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9483ZJGC/",
"accession": "IGVFDO9483ZJGC",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS6313MUQP/",
"accession": "IGVFDS6313MUQP",
"aliases": [
"jimmie-ye:XX6-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS9590YCER/",
"accession": "IGVFDS9590YCER",
"aliases": [
"jimmie-ye:XX6-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS4986YZPJ/",
"accession": "IGVFDS4986YZPJ",
"aliases": [
"jimmie-ye:XX6-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM8011QQCC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8011QQCC",
"donors": [
{
"@id": "/human-donors/IGVFDO1973NMET/",
"accession": "IGVFDO1973NMET",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3806JVDV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3806JVDV",
"donors": [
{
"@id": "/human-donors/IGVFDO7141VYUU/",
"accession": "IGVFDO7141VYUU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1242BVOZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1242BVOZ",
"donors": [
{
"@id": "/human-donors/IGVFDO5152JBHA/",
"accession": "IGVFDO5152JBHA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5368GXHC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5368GXHC",
"donors": [
{
"@id": "/human-donors/IGVFDO5763KEVL/",
"accession": "IGVFDO5763KEVL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4894GKKM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4894GKKM",
"donors": [
{
"@id": "/human-donors/IGVFDO9258XPYT/",
"accession": "IGVFDO9258XPYT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 54.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5281FUPE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5281FUPE",
"donors": [
{
"@id": "/human-donors/IGVFDO2352VYLK/",
"accession": "IGVFDO2352VYLK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 22.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5359UPVE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5359UPVE",
"donors": [
{
"@id": "/human-donors/IGVFDO5736PQLJ/",
"accession": "IGVFDO5736PQLJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3985DMCN/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3985DMCN",
"donors": [
{
"@id": "/human-donors/IGVFDO3702UVDF/",
"accession": "IGVFDO3702UVDF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3401SPZD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3401SPZD",
"donors": [
{
"@id": "/human-donors/IGVFDO8861CLWQ/",
"accession": "IGVFDO8861CLWQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 36.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7811VRFQ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7811VRFQ",
"donors": [
{
"@id": "/human-donors/IGVFDO6428YYEA/",
"accession": "IGVFDO6428YYEA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 43.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6307YTJE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6307YTJE",
"donors": [
{
"@id": "/human-donors/IGVFDO1097IKXR/",
"accession": "IGVFDO1097IKXR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7627CABX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7627CABX",
"donors": [
{
"@id": "/human-donors/IGVFDO9483ZJGC/",
"accession": "IGVFDO9483ZJGC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 52.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6554RXLY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6554RXLY",
"donors": [
{
"@id": "/human-donors/IGVFDO3832NYGT/",
"accession": "IGVFDO3832NYGT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1831HMYG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1831HMYG",
"donors": [
{
"@id": "/human-donors/IGVFDO6411OGIR/",
"accession": "IGVFDO6411OGIR",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 18.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3603AKTS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3603AKTS",
"donors": [
{
"@id": "/human-donors/IGVFDO0777MUKN/",
"accession": "IGVFDO0777MUKN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2700XFSD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2700XFSD",
"donors": [
{
"@id": "/human-donors/IGVFDO1787OLPT/",
"accession": "IGVFDO1787OLPT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9556JLDR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9556JLDR",
"donors": [
{
"@id": "/human-donors/IGVFDO0059PRQY/",
"accession": "IGVFDO0059PRQY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 44.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7822AWCB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7822AWCB",
"donors": [
{
"@id": "/human-donors/IGVFDO4801VLZE/",
"accession": "IGVFDO4801VLZE",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6307XEDD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6307XEDD",
"donors": [
{
"@id": "/human-donors/IGVFDO0744XMPI/",
"accession": "IGVFDO0744XMPI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 28.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 18.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "050b6f10-7981-4b38-a438-70b1e1ce02fc",
"virtual": false
}