{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM2167TFTJ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2167TFTJ",
"aliases": [
"jimmie-ye:XX5-SC4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM2167TFTJ](/multiplexed-samples/IGVFSM2167TFTJ/) has in progress subobject tabular file [IGVFFI3248MFBS](/tabular-files/IGVFFI3248MFBS/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM2167TFTJ/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI3248MFBS/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:19:26.667518+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0661AHIY/",
"accession": "IGVFDO0661AHIY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1032SRIG/",
"accession": "IGVFDO1032SRIG",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1235VQZZ/",
"accession": "IGVFDO1235VQZZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1350DNAQ/",
"accession": "IGVFDO1350DNAQ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1549WGKA/",
"accession": "IGVFDO1549WGKA",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1597VNPL/",
"accession": "IGVFDO1597VNPL",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2527JIVD/",
"accession": "IGVFDO2527JIVD",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2706YKLT/",
"accession": "IGVFDO2706YKLT",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2996BOCU/",
"accession": "IGVFDO2996BOCU",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3257TCSB/",
"accession": "IGVFDO3257TCSB",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3845IYAF/",
"accession": "IGVFDO3845IYAF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4344ULCN/",
"accession": "IGVFDO4344ULCN",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4954ETPK/",
"accession": "IGVFDO4954ETPK",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5179ABLX/",
"accession": "IGVFDO5179ABLX",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6385QOVY/",
"accession": "IGVFDO6385QOVY",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6999PPOZ/",
"accession": "IGVFDO6999PPOZ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7520LIHZ/",
"accession": "IGVFDO7520LIHZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7690XOKF/",
"accession": "IGVFDO7690XOKF",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS3666WZCD/",
"accession": "IGVFDS3666WZCD",
"aliases": [
"jimmie-ye:XX5-SC4_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2727UHPQ/",
"accession": "IGVFDS2727UHPQ",
"aliases": [
"jimmie-ye:XX5-SC4_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS0638JYOC/",
"accession": "IGVFDS0638JYOC",
"aliases": [
"jimmie-ye:XX5-SC4-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM8312ZZOU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8312ZZOU",
"donors": [
{
"@id": "/human-donors/IGVFDO2706YKLT/",
"accession": "IGVFDO2706YKLT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2999YOEY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2999YOEY",
"donors": [
{
"@id": "/human-donors/IGVFDO6385QOVY/",
"accession": "IGVFDO6385QOVY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 46.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2508AGMP/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2508AGMP",
"donors": [
{
"@id": "/human-donors/IGVFDO0661AHIY/",
"accession": "IGVFDO0661AHIY",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7032LXIV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7032LXIV",
"donors": [
{
"@id": "/human-donors/IGVFDO1597VNPL/",
"accession": "IGVFDO1597VNPL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 30.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3451HBND/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3451HBND",
"donors": [
{
"@id": "/human-donors/IGVFDO1235VQZZ/",
"accession": "IGVFDO1235VQZZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0754ZXBD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0754ZXBD",
"donors": [
{
"@id": "/human-donors/IGVFDO5179ABLX/",
"accession": "IGVFDO5179ABLX",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0092RHNS/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0092RHNS",
"donors": [
{
"@id": "/human-donors/IGVFDO3845IYAF/",
"accession": "IGVFDO3845IYAF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 42.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2415JAVD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2415JAVD",
"donors": [
{
"@id": "/human-donors/IGVFDO4344ULCN/",
"accession": "IGVFDO4344ULCN",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9992DOHI/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9992DOHI",
"donors": [
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8828IEJU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8828IEJU",
"donors": [
{
"@id": "/human-donors/IGVFDO2996BOCU/",
"accession": "IGVFDO2996BOCU",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3866MKRO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3866MKRO",
"donors": [
{
"@id": "/human-donors/IGVFDO6999PPOZ/",
"accession": "IGVFDO6999PPOZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3429LZDB/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3429LZDB",
"donors": [
{
"@id": "/human-donors/IGVFDO7690XOKF/",
"accession": "IGVFDO7690XOKF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM3590MHVL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3590MHVL",
"donors": [
{
"@id": "/human-donors/IGVFDO3257TCSB/",
"accession": "IGVFDO3257TCSB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 54.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7677XKPQ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7677XKPQ",
"donors": [
{
"@id": "/human-donors/IGVFDO4954ETPK/",
"accession": "IGVFDO4954ETPK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8938LFSR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8938LFSR",
"donors": [
{
"@id": "/human-donors/IGVFDO1549WGKA/",
"accession": "IGVFDO1549WGKA",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1605GTKC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1605GTKC",
"donors": [
{
"@id": "/human-donors/IGVFDO1032SRIG/",
"accession": "IGVFDO1032SRIG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 48.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2589FJNL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2589FJNL",
"donors": [
{
"@id": "/human-donors/IGVFDO1350DNAQ/",
"accession": "IGVFDO1350DNAQ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1849RCTC/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1849RCTC",
"donors": [
{
"@id": "/human-donors/IGVFDO2527JIVD/",
"accession": "IGVFDO2527JIVD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM8074HGKG/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8074HGKG",
"donors": [
{
"@id": "/human-donors/IGVFDO7520LIHZ/",
"accession": "IGVFDO7520LIHZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 42.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 32.0 years) peripheral blood mononuclear cell; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "6d2f13f7-6747-4145-b927-f35a9974121f",
"virtual": false
}