bone marrow — IGVFSM1625LLXE

preview
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM1625LLXE/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM1625LLXE",
10    "aliases": [
11        "maya-kasowski:multiplexed_samples_Scale",
12        "maya-kasowski:multiplexed_samples_Scale_scATAC"
13    ],
14    "audit": {
15        "NOT_COMPLIANT": [
16            {
17                "category": "missing barcode map",
18                "detail": "Multiplexed sample [IGVFSM1625LLXE](/multiplexed-samples/IGVFSM1625LLXE/) has no `barcode_map`. Multiplexed samples that use barcodes for demultiplexing are expected to specify a barcode map.",
19                "level": 50,
20                "level_name": "NOT_COMPLIANT",
21                "name": "audit_multiplexed_sample_no_barcode_map",
22                "path": "/multiplexed-samples/IGVFSM1625LLXE/"
23            }
24        ]
25    },
26    "award": {
27        "@id": "/awards/HG012076/",
28        "component": "mapping"
29    },
30    "biomarkers": [],
31    "classifications": [
32        "primary cell",
33        "multiplexed sample"
34    ],
35    "creation_timestamp": "2025-03-07T07:01:19.952054+00:00",
36    "disease_terms": [],
37    "donors": [
38        {
39            "@id": "/human-donors/IGVFDO0898EWTR/",
40            "accession": "IGVFDO0898EWTR",
41            "status": "released"
42        },
43        {
44            "@id": "/human-donors/IGVFDO0903GCXW/",
45            "accession": "IGVFDO0903GCXW",
46            "status": "released"
47        },
48        {
49            "@id": "/human-donors/IGVFDO1129QRIW/",
50            "accession": "IGVFDO1129QRIW",
51            "status": "released"
52        },
53        {
54            "@id": "/human-donors/IGVFDO1836DUYP/",
55            "accession": "IGVFDO1836DUYP",
56            "status": "released"
57        },
58        {
59            "@id": "/human-donors/IGVFDO2417NVHU/",
60            "accession": "IGVFDO2417NVHU",
61            "status": "released"
62        },
63        {
64            "@id": "/human-donors/IGVFDO2788XNBM/",
65            "accession": "IGVFDO2788XNBM",
66            "status": "released"
67        },
68        {
69            "@id": "/human-donors/IGVFDO3006RCEY/",
70            "accession": "IGVFDO3006RCEY",
71            "status": "released"
72        },
73        {
74            "@id": "/human-donors/IGVFDO3010QRAU/",
75            "accession": "IGVFDO3010QRAU",
76            "status": "released"
77        },
78        {
79            "@id": "/human-donors/IGVFDO3127CQWI/",
80            "accession": "IGVFDO3127CQWI",
81            "status": "released"
82        },
83        {
84            "@id": "/human-donors/IGVFDO3656DWZS/",
85            "accession": "IGVFDO3656DWZS",
86            "status": "released"
87        },
88        {
89            "@id": "/human-donors/IGVFDO4084QBKB/",
90            "accession": "IGVFDO4084QBKB",
91            "status": "released"
92        },
93        {
94            "@id": "/human-donors/IGVFDO4822HOJJ/",
95            "accession": "IGVFDO4822HOJJ",
96            "status": "released"
97        },
98        {
99            "@id": "/human-donors/IGVFDO5779BART/",
100            "accession": "IGVFDO5779BART",
101            "status": "released"
102        },
103        {
104            "@id": "/human-donors/IGVFDO6383SRAQ/",
105            "accession": "IGVFDO6383SRAQ",
106            "status": "released"
107        },
108        {
109            "@id": "/human-donors/IGVFDO6768UXWX/",
110            "accession": "IGVFDO6768UXWX",
111            "status": "released"
112        },
113        {
114            "@id": "/human-donors/IGVFDO7396NRBT/",
115            "accession": "IGVFDO7396NRBT",
116            "status": "released"
117        },
118        {
119            "@id": "/human-donors/IGVFDO8056NEJH/",
120            "accession": "IGVFDO8056NEJH",
121            "status": "released"
122        },
123        {
124            "@id": "/human-donors/IGVFDO9046WFVW/",
125            "accession": "IGVFDO9046WFVW",
126            "status": "released"
127        },
128        {
129            "@id": "/human-donors/IGVFDO9084ROFI/",
130            "accession": "IGVFDO9084ROFI",
131            "status": "released"
132        },
133        {
134            "@id": "/human-donors/IGVFDO9247BXQA/",
135            "accession": "IGVFDO9247BXQA",
136            "status": "released"
137        },
138        {
139            "@id": "/human-donors/IGVFDO9663VUZC/",
140            "accession": "IGVFDO9663VUZC",
141            "status": "released"
142        },
143        {
144            "@id": "/human-donors/IGVFDO9713CSCX/",
145            "accession": "IGVFDO9713CSCX",
146            "status": "released"
147        },
148        {
149            "@id": "/human-donors/IGVFDO9834PLUM/",
150            "accession": "IGVFDO9834PLUM",
151            "status": "released"
152        }
153    ],
154    "file_sets": [
155        {
156            "@id": "/measurement-sets/IGVFDS1790XLZR/",
157            "accession": "IGVFDS1790XLZR",
158            "aliases": [
159                "maya-kasowski:Scale_scATAC"
160            ],
161            "file_set_type": "experimental data",
162            "lab": {
163                "title": "Maya Kasowski, Stanford"
164            },
165            "preferred_assay_title": "scATAC-seq",
166            "status": "preview",
167            "summary": "scATAC-seq"
168        }
169    ],
170    "institutional_certificates": [
171        {
172            "@id": "/institutional-certificates/5d9a7abd-9957-4b1a-91cd-72ce9610785c/",
173            "certificate_identifier": "IP115-20",
174            "controlled_access": true,
175            "data_use_limitation": "GRU",
176            "status": "released"
177        }
178    ],
179    "lab": {
180        "@id": "/labs/maya-kasowski/",
181        "title": "Maya Kasowski, Stanford"
182    },
183    "modifications": [],
184    "multiplexed_in": [],
185    "multiplexed_samples": [
186        {
187            "@id": "/primary-cells/IGVFSM3029MIRU/",
188            "@type": [
189                "PrimaryCell",
190                "Biosample",
191                "Sample",
192                "Item"
193            ],
194            "accession": "IGVFSM3029MIRU",
195            "donors": [
196                {
197                    "@id": "/human-donors/IGVFDO8056NEJH/",
198                    "accession": "IGVFDO8056NEJH",
199                    "status": "released"
200                }
201            ],
202            "sample_terms": [
203                {
204                    "@id": "/sample-terms/UBERON_0002371/",
205                    "status": "released",
206                    "term_name": "bone marrow"
207                }
208            ],
209            "status": "released",
210            "summary": "Homo sapiens bone marrow cell"
211        },
212        {
213            "@id": "/primary-cells/IGVFSM3929UTIP/",
214            "@type": [
215                "PrimaryCell",
216                "Biosample",
217                "Sample",
218                "Item"
219            ],
220            "accession": "IGVFSM3929UTIP",
221            "donors": [
222                {
223                    "@id": "/human-donors/IGVFDO7396NRBT/",
224                    "accession": "IGVFDO7396NRBT",
225                    "status": "released"
226                }
227            ],
228            "sample_terms": [
229                {
230                    "@id": "/sample-terms/UBERON_0002371/",
231                    "status": "released",
232                    "term_name": "bone marrow"
233                }
234            ],
235            "status": "released",
236            "summary": "Homo sapiens bone marrow cell"
237        },
238        {
239            "@id": "/primary-cells/IGVFSM7706IRBK/",
240            "@type": [
241                "PrimaryCell",
242                "Biosample",
243                "Sample",
244                "Item"
245            ],
246            "accession": "IGVFSM7706IRBK",
247            "donors": [
248                {
249                    "@id": "/human-donors/IGVFDO9663VUZC/",
250                    "accession": "IGVFDO9663VUZC",
251                    "status": "released"
252                }
253            ],
254            "sample_terms": [
255                {
256                    "@id": "/sample-terms/UBERON_0002371/",
257                    "status": "released",
258                    "term_name": "bone marrow"
259                }
260            ],
261            "status": "released",
262            "summary": "Homo sapiens bone marrow cell"
263        },
264        {
265            "@id": "/primary-cells/IGVFSM5709TGBU/",
266            "@type": [
267                "PrimaryCell",
268                "Biosample",
269                "Sample",
270                "Item"
271            ],
272            "accession": "IGVFSM5709TGBU",
273            "donors": [
274                {
275                    "@id": "/human-donors/IGVFDO3006RCEY/",
276                    "accession": "IGVFDO3006RCEY",
277                    "status": "released"
278                }
279            ],
280            "sample_terms": [
281                {
282                    "@id": "/sample-terms/UBERON_0002371/",
283                    "status": "released",
284                    "term_name": "bone marrow"
285                }
286            ],
287            "status": "released",
288            "summary": "Homo sapiens bone marrow cell"
289        },
290        {
291            "@id": "/primary-cells/IGVFSM0581CJSS/",
292            "@type": [
293                "PrimaryCell",
294                "Biosample",
295                "Sample",
296                "Item"
297            ],
298            "accession": "IGVFSM0581CJSS",
299            "donors": [
300                {
301                    "@id": "/human-donors/IGVFDO2788XNBM/",
302                    "accession": "IGVFDO2788XNBM",
303                    "status": "released"
304                }
305            ],
306            "sample_terms": [
307                {
308                    "@id": "/sample-terms/UBERON_0002371/",
309                    "status": "released",
310                    "term_name": "bone marrow"
311                }
312            ],
313            "status": "released",
314            "summary": "Homo sapiens bone marrow cell"
315        },
316        {
317            "@id": "/primary-cells/IGVFSM4928XYWH/",
318            "@type": [
319                "PrimaryCell",
320                "Biosample",
321                "Sample",
322                "Item"
323            ],
324            "accession": "IGVFSM4928XYWH",
325            "donors": [
326                {
327                    "@id": "/human-donors/IGVFDO6768UXWX/",
328                    "accession": "IGVFDO6768UXWX",
329                    "status": "released"
330                }
331            ],
332            "sample_terms": [
333                {
334                    "@id": "/sample-terms/UBERON_0002371/",
335                    "status": "released",
336                    "term_name": "bone marrow"
337                }
338            ],
339            "status": "released",
340            "summary": "Homo sapiens bone marrow cell"
341        },
342        {
343            "@id": "/primary-cells/IGVFSM8301YEYP/",
344            "@type": [
345                "PrimaryCell",
346                "Biosample",
347                "Sample",
348                "Item"
349            ],
350            "accession": "IGVFSM8301YEYP",
351            "donors": [
352                {
353                    "@id": "/human-donors/IGVFDO1129QRIW/",
354                    "accession": "IGVFDO1129QRIW",
355                    "status": "released"
356                }
357            ],
358            "sample_terms": [
359                {
360                    "@id": "/sample-terms/UBERON_0002371/",
361                    "status": "released",
362                    "term_name": "bone marrow"
363                }
364            ],
365            "status": "released",
366            "summary": "Homo sapiens (male) bone marrow cell"
367        },
368        {
369            "@id": "/primary-cells/IGVFSM9602VGKH/",
370            "@type": [
371                "PrimaryCell",
372                "Biosample",
373                "Sample",
374                "Item"
375            ],
376            "accession": "IGVFSM9602VGKH",
377            "donors": [
378                {
379                    "@id": "/human-donors/IGVFDO3656DWZS/",
380                    "accession": "IGVFDO3656DWZS",
381                    "status": "released"
382                }
383            ],
384            "sample_terms": [
385                {
386                    "@id": "/sample-terms/UBERON_0002371/",
387                    "status": "released",
388                    "term_name": "bone marrow"
389                }
390            ],
391            "status": "released",
392            "summary": "Homo sapiens (female) bone marrow cell"
393        },
394        {
395            "@id": "/primary-cells/IGVFSM5874RLLU/",
396            "@type": [
397                "PrimaryCell",
398                "Biosample",
399                "Sample",
400                "Item"
401            ],
402            "accession": "IGVFSM5874RLLU",
403            "donors": [
404                {
405                    "@id": "/human-donors/IGVFDO9084ROFI/",
406                    "accession": "IGVFDO9084ROFI",
407                    "status": "released"
408                }
409            ],
410            "sample_terms": [
411                {
412                    "@id": "/sample-terms/UBERON_0002371/",
413                    "status": "released",
414                    "term_name": "bone marrow"
415                }
416            ],
417            "status": "released",
418            "summary": "Homo sapiens (female) bone marrow cell"
419        },
420        {
421            "@id": "/primary-cells/IGVFSM4646RYKA/",
422            "@type": [
423                "PrimaryCell",
424                "Biosample",
425                "Sample",
426                "Item"
427            ],
428            "accession": "IGVFSM4646RYKA",
429            "donors": [
430                {
431                    "@id": "/human-donors/IGVFDO1836DUYP/",
432                    "accession": "IGVFDO1836DUYP",
433                    "status": "released"
434                }
435            ],
436            "sample_terms": [
437                {
438                    "@id": "/sample-terms/UBERON_0002371/",
439                    "status": "released",
440                    "term_name": "bone marrow"
441                }
442            ],
443            "status": "released",
444            "summary": "Homo sapiens bone marrow cell"
445        },
446        {
447            "@id": "/primary-cells/IGVFSM5209OUZF/",
448            "@type": [
449                "PrimaryCell",
450                "Biosample",
451                "Sample",
452                "Item"
453            ],
454            "accession": "IGVFSM5209OUZF",
455            "donors": [
456                {
457                    "@id": "/human-donors/IGVFDO0898EWTR/",
458                    "accession": "IGVFDO0898EWTR",
459                    "status": "released"
460                }
461            ],
462            "sample_terms": [
463                {
464                    "@id": "/sample-terms/UBERON_0002371/",
465                    "status": "released",
466                    "term_name": "bone marrow"
467                }
468            ],
469            "status": "released",
470            "summary": "Homo sapiens (male) bone marrow cell"
471        },
472        {
473            "@id": "/primary-cells/IGVFSM2473ULRQ/",
474            "@type": [
475                "PrimaryCell",
476                "Biosample",
477                "Sample",
478                "Item"
479            ],
480            "accession": "IGVFSM2473ULRQ",
481            "donors": [
482                {
483                    "@id": "/human-donors/IGVFDO2417NVHU/",
484                    "accession": "IGVFDO2417NVHU",
485                    "status": "released"
486                }
487            ],
488            "sample_terms": [
489                {
490                    "@id": "/sample-terms/UBERON_0002371/",
491                    "status": "released",
492                    "term_name": "bone marrow"
493                }
494            ],
495            "status": "released",
496            "summary": "Homo sapiens (female) bone marrow cell"
497        },
498        {
499            "@id": "/primary-cells/IGVFSM4917TSGH/",
500            "@type": [
501                "PrimaryCell",
502                "Biosample",
503                "Sample",
504                "Item"
505            ],
506            "accession": "IGVFSM4917TSGH",
507            "donors": [
508                {
509                    "@id": "/human-donors/IGVFDO4084QBKB/",
510                    "accession": "IGVFDO4084QBKB",
511                    "status": "released"
512                }
513            ],
514            "sample_terms": [
515                {
516                    "@id": "/sample-terms/UBERON_0002371/",
517                    "status": "released",
518                    "term_name": "bone marrow"
519                }
520            ],
521            "status": "released",
522            "summary": "Homo sapiens (male) bone marrow cell"
523        },
524        {
525            "@id": "/primary-cells/IGVFSM7467BMWJ/",
526            "@type": [
527                "PrimaryCell",
528                "Biosample",
529                "Sample",
530                "Item"
531            ],
532            "accession": "IGVFSM7467BMWJ",
533            "donors": [
534                {
535                    "@id": "/human-donors/IGVFDO6383SRAQ/",
536                    "accession": "IGVFDO6383SRAQ",
537                    "status": "released"
538                }
539            ],
540            "sample_terms": [
541                {
542                    "@id": "/sample-terms/UBERON_0002371/",
543                    "status": "released",
544                    "term_name": "bone marrow"
545                }
546            ],
547            "status": "released",
548            "summary": "Homo sapiens (male) bone marrow cell"
549        },
550        {
551            "@id": "/primary-cells/IGVFSM4994MYXP/",
552            "@type": [
553                "PrimaryCell",
554                "Biosample",
555                "Sample",
556                "Item"
557            ],
558            "accession": "IGVFSM4994MYXP",
559            "donors": [
560                {
561                    "@id": "/human-donors/IGVFDO9713CSCX/",
562                    "accession": "IGVFDO9713CSCX",
563                    "status": "released"
564                }
565            ],
566            "sample_terms": [
567                {
568                    "@id": "/sample-terms/UBERON_0002371/",
569                    "status": "released",
570                    "term_name": "bone marrow"
571                }
572            ],
573            "status": "released",
574            "summary": "Homo sapiens (female) bone marrow cell"
575        },
576        {
577            "@id": "/primary-cells/IGVFSM6360JZDZ/",
578            "@type": [
579                "PrimaryCell",
580                "Biosample",
581                "Sample",
582                "Item"
583            ],
584            "accession": "IGVFSM6360JZDZ",
585            "donors": [
586                {
587                    "@id": "/human-donors/IGVFDO5779BART/",
588                    "accession": "IGVFDO5779BART",
589                    "status": "released"
590                }
591            ],
592            "sample_terms": [
593                {
594                    "@id": "/sample-terms/UBERON_0002371/",
595                    "status": "released",
596                    "term_name": "bone marrow"
597                }
598            ],
599            "status": "released",
600            "summary": "Homo sapiens (male) bone marrow cell"
601        },
602        {
603            "@id": "/primary-cells/IGVFSM0863UBKQ/",
604            "@type": [
605                "PrimaryCell",
606                "Biosample",
607                "Sample",
608                "Item"
609            ],
610            "accession": "IGVFSM0863UBKQ",
611            "donors": [
612                {
613                    "@id": "/human-donors/IGVFDO9247BXQA/",
614                    "accession": "IGVFDO9247BXQA",
615                    "status": "released"
616                }
617            ],
618            "sample_terms": [
619                {
620                    "@id": "/sample-terms/UBERON_0002371/",
621                    "status": "released",
622                    "term_name": "bone marrow"
623                }
624            ],
625            "status": "released",
626            "summary": "Homo sapiens (female) bone marrow cell"
627        },
628        {
629            "@id": "/primary-cells/IGVFSM8506OXWG/",
630            "@type": [
631                "PrimaryCell",
632                "Biosample",
633                "Sample",
634                "Item"
635            ],
636            "accession": "IGVFSM8506OXWG",
637            "donors": [
638                {
639                    "@id": "/human-donors/IGVFDO9046WFVW/",
640                    "accession": "IGVFDO9046WFVW",
641                    "status": "released"
642                }
643            ],
644            "sample_terms": [
645                {
646                    "@id": "/sample-terms/UBERON_0002371/",
647                    "status": "released",
648                    "term_name": "bone marrow"
649                }
650            ],
651            "status": "released",
652            "summary": "Homo sapiens (male) bone marrow cell"
653        },
654        {
655            "@id": "/primary-cells/IGVFSM2560VILO/",
656            "@type": [
657                "PrimaryCell",
658                "Biosample",
659                "Sample",
660                "Item"
661            ],
662            "accession": "IGVFSM2560VILO",
663            "donors": [
664                {
665                    "@id": "/human-donors/IGVFDO3127CQWI/",
666                    "accession": "IGVFDO3127CQWI",
667                    "status": "released"
668                }
669            ],
670            "sample_terms": [
671                {
672                    "@id": "/sample-terms/UBERON_0002371/",
673                    "status": "released",
674                    "term_name": "bone marrow"
675                }
676            ],
677            "status": "released",
678            "summary": "Homo sapiens (female) bone marrow cell"
679        },
680        {
681            "@id": "/primary-cells/IGVFSM2041HMYC/",
682            "@type": [
683                "PrimaryCell",
684                "Biosample",
685                "Sample",
686                "Item"
687            ],
688            "accession": "IGVFSM2041HMYC",
689            "donors": [
690                {
691                    "@id": "/human-donors/IGVFDO9834PLUM/",
692                    "accession": "IGVFDO9834PLUM",
693                    "status": "released"
694                }
695            ],
696            "sample_terms": [
697                {
698                    "@id": "/sample-terms/UBERON_0002371/",
699                    "status": "released",
700                    "term_name": "bone marrow"
701                }
702            ],
703            "status": "released",
704            "summary": "Homo sapiens (female) bone marrow cell"
705        },
706        {
707            "@id": "/primary-cells/IGVFSM5600IQHV/",
708            "@type": [
709                "PrimaryCell",
710                "Biosample",
711                "Sample",
712                "Item"
713            ],
714            "accession": "IGVFSM5600IQHV",
715            "donors": [
716                {
717                    "@id": "/human-donors/IGVFDO4822HOJJ/",
718                    "accession": "IGVFDO4822HOJJ",
719                    "status": "released"
720                }
721            ],
722            "sample_terms": [
723                {
724                    "@id": "/sample-terms/UBERON_0002371/",
725                    "status": "released",
726                    "term_name": "bone marrow"
727                }
728            ],
729            "status": "released",
730            "summary": "Homo sapiens (female) bone marrow cell"
731        },
732        {
733            "@id": "/primary-cells/IGVFSM4986COEO/",
734            "@type": [
735                "PrimaryCell",
736                "Biosample",
737                "Sample",
738                "Item"
739            ],
740            "accession": "IGVFSM4986COEO",
741            "donors": [
742                {
743                    "@id": "/human-donors/IGVFDO0903GCXW/",
744                    "accession": "IGVFDO0903GCXW",
745                    "status": "released"
746                }
747            ],
748            "sample_terms": [
749                {
750                    "@id": "/sample-terms/UBERON_0002371/",
751                    "status": "released",
752                    "term_name": "bone marrow"
753                }
754            ],
755            "status": "released",
756            "summary": "Homo sapiens (female) bone marrow cell"
757        },
758        {
759            "@id": "/primary-cells/IGVFSM6526PSMT/",
760            "@type": [
761                "PrimaryCell",
762                "Biosample",
763                "Sample",
764                "Item"
765            ],
766            "accession": "IGVFSM6526PSMT",
767            "donors": [
768                {
769                    "@id": "/human-donors/IGVFDO3010QRAU/",
770                    "accession": "IGVFDO3010QRAU",
771                    "status": "released"
772                }
773            ],
774            "sample_terms": [
775                {
776                    "@id": "/sample-terms/UBERON_0002371/",
777                    "status": "released",
778                    "term_name": "bone marrow"
779                }
780            ],
781            "status": "released",
782            "summary": "Homo sapiens (female) bone marrow cell"
783        }
784    ],
785    "multiplexing_methods": [
786        "genetic",
787        "barcode based"
788    ],
789    "origin_of": [],
790    "sample_terms": [
791        {
792            "@id": "/sample-terms/UBERON_0002371/",
793            "status": "released",
794            "term_name": "bone marrow"
795        }
796    ],
797    "schema_version": "10",
798    "sorted_fractions": [],
799    "sources": [
800        {
801            "@id": "/labs/maya-kasowski/",
802            "status": "current",
803            "title": "Maya Kasowski, Stanford"
804        }
805    ],
806    "status": "preview",
807    "submitted_by": {
808        "@id": "/users/2bebcf9d-414f-4058-8d97-00020741a419/",
809        "title": "Shouvik Mani"
810    },
811    "summary": "multiplexed sample: Homo sapiens bone marrow cell; Homo sapiens (female) bone marrow cell; ... and 21 more samples",
812    "taxa": "Homo sapiens",
813    "treatments": [],
814    "uuid": "813ad3a2-5d9b-43c3-bbf1-506bf3c32f95",
815    "virtual": false
816}