GM25256 (WTC-11) — IGVFSM1624SZQN

released
1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM1624SZQN/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM1624SZQN",
10    "aliases": [
11        "ansuman-satpathy:multiplexed_sample_igvf15_10x3"
12    ],
13    "audit": {
14        "INTERNAL_ACTION": [
15            {
16                "category": "missing publication",
17                "detail": "In vitro system [IGVFSM6112TPWG](/in-vitro-systems/IGVFSM6112TPWG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
18                "level": 30,
19                "level_name": "INTERNAL_ACTION",
20                "name": "audit_sample_missing_publication",
21                "path": "/in-vitro-systems/IGVFSM6112TPWG/"
22            },
23            {
24                "category": "missing publication",
25                "detail": "In vitro system [IGVFSM3274KOYI](/in-vitro-systems/IGVFSM3274KOYI/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_sample_missing_publication",
29                "path": "/in-vitro-systems/IGVFSM3274KOYI/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "In vitro system [IGVFSM4988UKJP](/in-vitro-systems/IGVFSM4988UKJP/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_sample_missing_publication",
37                "path": "/in-vitro-systems/IGVFSM4988UKJP/"
38            },
39            {
40                "category": "missing publication",
41                "detail": "In vitro system [IGVFSM0061CGCM](/in-vitro-systems/IGVFSM0061CGCM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_sample_missing_publication",
45                "path": "/in-vitro-systems/IGVFSM0061CGCM/"
46            },
47            {
48                "category": "missing publication",
49                "detail": "In vitro system [IGVFSM0703TJTR](/in-vitro-systems/IGVFSM0703TJTR/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_sample_missing_publication",
53                "path": "/in-vitro-systems/IGVFSM0703TJTR/"
54            },
55            {
56                "category": "missing publication",
57                "detail": "In vitro system [IGVFSM8705HTOD](/in-vitro-systems/IGVFSM8705HTOD/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_sample_missing_publication",
61                "path": "/in-vitro-systems/IGVFSM8705HTOD/"
62            },
63            {
64                "category": "missing publication",
65                "detail": "In vitro system [IGVFSM0098GQKH](/in-vitro-systems/IGVFSM0098GQKH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
66                "level": 30,
67                "level_name": "INTERNAL_ACTION",
68                "name": "audit_sample_missing_publication",
69                "path": "/in-vitro-systems/IGVFSM0098GQKH/"
70            },
71            {
72                "category": "missing publication",
73                "detail": "In vitro system [IGVFSM8931JVUF](/in-vitro-systems/IGVFSM8931JVUF/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
74                "level": 30,
75                "level_name": "INTERNAL_ACTION",
76                "name": "audit_sample_missing_publication",
77                "path": "/in-vitro-systems/IGVFSM8931JVUF/"
78            },
79            {
80                "category": "missing publication",
81                "detail": "In vitro system [IGVFSM9547HICX](/in-vitro-systems/IGVFSM9547HICX/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
82                "level": 30,
83                "level_name": "INTERNAL_ACTION",
84                "name": "audit_sample_missing_publication",
85                "path": "/in-vitro-systems/IGVFSM9547HICX/"
86            },
87            {
88                "category": "missing publication",
89                "detail": "In vitro system [IGVFSM8651WJRG](/in-vitro-systems/IGVFSM8651WJRG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
90                "level": 30,
91                "level_name": "INTERNAL_ACTION",
92                "name": "audit_sample_missing_publication",
93                "path": "/in-vitro-systems/IGVFSM8651WJRG/"
94            },
95            {
96                "category": "missing publication",
97                "detail": "In vitro system [IGVFSM0024HDNQ](/in-vitro-systems/IGVFSM0024HDNQ/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
98                "level": 30,
99                "level_name": "INTERNAL_ACTION",
100                "name": "audit_sample_missing_publication",
101                "path": "/in-vitro-systems/IGVFSM0024HDNQ/"
102            },
103            {
104                "category": "missing publication",
105                "detail": "Multiplexed sample [IGVFSM1624SZQN](/multiplexed-samples/IGVFSM1624SZQN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
106                "level": 30,
107                "level_name": "INTERNAL_ACTION",
108                "name": "audit_sample_missing_publication",
109                "path": "/multiplexed-samples/IGVFSM1624SZQN/"
110            },
111            {
112                "category": "missing publication",
113                "detail": "In vitro system [IGVFSM8171OYSA](/in-vitro-systems/IGVFSM8171OYSA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
114                "level": 30,
115                "level_name": "INTERNAL_ACTION",
116                "name": "audit_sample_missing_publication",
117                "path": "/in-vitro-systems/IGVFSM8171OYSA/"
118            }
119        ]
120    },
121    "award": {
122        "@id": "/awards/HG012076/",
123        "component": "mapping"
124    },
125    "barcode_map": "/tabular-files/IGVFFI6468JUDR/",
126    "biomarkers": [],
127    "cellular_sub_pool": "3",
128    "classifications": [
129        "differentiated cell specimen",
130        "multiplexed sample"
131    ],
132    "creation_timestamp": "2025-01-27T22:54:45.098885+00:00",
133    "disease_terms": [],
134    "donors": [
135        {
136            "@id": "/human-donors/IGVFDO1756PPKO/",
137            "accession": "IGVFDO1756PPKO",
138            "ethnicities": [
139                "Japanese"
140            ],
141            "status": "released"
142        }
143    ],
144    "file_sets": [
145        {
146            "@id": "/auxiliary-sets/IGVFDS8920TKBO/",
147            "accession": "IGVFDS8920TKBO",
148            "aliases": [
149                "ansuman-satpathy:multiseq_igvf15_10x3"
150            ],
151            "file_set_type": "lipid-conjugated oligo sequencing",
152            "lab": {
153                "title": "Ansuman Satpathy, Stanford"
154            },
155            "status": "released",
156            "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
157        },
158        {
159            "@id": "/measurement-sets/IGVFDS8563NWFI/",
160            "accession": "IGVFDS8563NWFI",
161            "aliases": [
162                "ansuman-satpathy:snATAC-seq_igvf15_10x3"
163            ],
164            "file_set_type": "experimental data",
165            "lab": {
166                "title": "Ansuman Satpathy, Stanford"
167            },
168            "preferred_assay_title": "10x multiome with MULTI-seq",
169            "status": "released",
170            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
171        },
172        {
173            "@id": "/measurement-sets/IGVFDS8608TBPZ/",
174            "accession": "IGVFDS8608TBPZ",
175            "aliases": [
176                "ansuman-satpathy:snRNA-seq_igvf15_10x3"
177            ],
178            "file_set_type": "experimental data",
179            "lab": {
180                "title": "Ansuman Satpathy, Stanford"
181            },
182            "preferred_assay_title": "10x multiome with MULTI-seq",
183            "status": "released",
184            "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
185        },
186        {
187            "@id": "/analysis-sets/IGVFDS3114UZXE/",
188            "accession": "IGVFDS3114UZXE",
189            "aliases": [
190                "ansuman-satpathy:igvf15_analysis_set_10x3"
191            ],
192            "file_set_type": "intermediate analysis",
193            "lab": {
194                "title": "Ansuman Satpathy, Stanford"
195            },
196            "status": "released",
197            "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
198        }
199    ],
200    "institutional_certificates": [
201        {
202            "@id": "/institutional-certificates/e5598331-9e7c-4bd5-8e7b-64d5a4529006/",
203            "certificate_identifier": "IP115-21",
204            "controlled_access": false,
205            "data_use_limitation_summary": "No limitations",
206            "status": "released"
207        }
208    ],
209    "lab": {
210        "@id": "/labs/ansuman-satpathy/",
211        "title": "Ansuman Satpathy, Stanford"
212    },
213    "modifications": [],
214    "multiplexed_in": [],
215    "multiplexed_samples": [
216        {
217            "@id": "/in-vitro-systems/IGVFSM3274KOYI/",
218            "@type": [
219                "InVitroSystem",
220                "Biosample",
221                "Sample",
222                "Item"
223            ],
224            "accession": "IGVFSM3274KOYI",
225            "donors": [
226                {
227                    "@id": "/human-donors/IGVFDO1756PPKO/",
228                    "accession": "IGVFDO1756PPKO",
229                    "status": "released"
230                }
231            ],
232            "sample_terms": [
233                {
234                    "@id": "/sample-terms/EFO_0009747/",
235                    "status": "released",
236                    "term_name": "GM25256 (WTC-11)"
237                }
238            ],
239            "status": "released",
240            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 3 days"
241        },
242        {
243            "@id": "/in-vitro-systems/IGVFSM8931JVUF/",
244            "@type": [
245                "InVitroSystem",
246                "Biosample",
247                "Sample",
248                "Item"
249            ],
250            "accession": "IGVFSM8931JVUF",
251            "donors": [
252                {
253                    "@id": "/human-donors/IGVFDO1756PPKO/",
254                    "accession": "IGVFDO1756PPKO",
255                    "status": "released"
256                }
257            ],
258            "sample_terms": [
259                {
260                    "@id": "/sample-terms/EFO_0009747/",
261                    "status": "released",
262                    "term_name": "GM25256 (WTC-11)"
263                }
264            ],
265            "status": "released",
266            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 3 days"
267        },
268        {
269            "@id": "/in-vitro-systems/IGVFSM4988UKJP/",
270            "@type": [
271                "InVitroSystem",
272                "Biosample",
273                "Sample",
274                "Item"
275            ],
276            "accession": "IGVFSM4988UKJP",
277            "donors": [
278                {
279                    "@id": "/human-donors/IGVFDO1756PPKO/",
280                    "accession": "IGVFDO1756PPKO",
281                    "status": "released"
282                }
283            ],
284            "sample_terms": [
285                {
286                    "@id": "/sample-terms/EFO_0009747/",
287                    "status": "released",
288                    "term_name": "GM25256 (WTC-11)"
289                }
290            ],
291            "status": "released",
292            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 3 days"
293        },
294        {
295            "@id": "/in-vitro-systems/IGVFSM9547HICX/",
296            "@type": [
297                "InVitroSystem",
298                "Biosample",
299                "Sample",
300                "Item"
301            ],
302            "accession": "IGVFSM9547HICX",
303            "donors": [
304                {
305                    "@id": "/human-donors/IGVFDO1756PPKO/",
306                    "accession": "IGVFDO1756PPKO",
307                    "status": "released"
308                }
309            ],
310            "sample_terms": [
311                {
312                    "@id": "/sample-terms/EFO_0009747/",
313                    "status": "released",
314                    "term_name": "GM25256 (WTC-11)"
315                }
316            ],
317            "status": "released",
318            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 8 days"
319        },
320        {
321            "@id": "/in-vitro-systems/IGVFSM8171OYSA/",
322            "@type": [
323                "InVitroSystem",
324                "Biosample",
325                "Sample",
326                "Item"
327            ],
328            "accession": "IGVFSM8171OYSA",
329            "donors": [
330                {
331                    "@id": "/human-donors/IGVFDO1756PPKO/",
332                    "accession": "IGVFDO1756PPKO",
333                    "status": "released"
334                }
335            ],
336            "sample_terms": [
337                {
338                    "@id": "/sample-terms/EFO_0009747/",
339                    "status": "released",
340                    "term_name": "GM25256 (WTC-11)"
341                }
342            ],
343            "status": "released",
344            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 8 days"
345        },
346        {
347            "@id": "/in-vitro-systems/IGVFSM8651WJRG/",
348            "@type": [
349                "InVitroSystem",
350                "Biosample",
351                "Sample",
352                "Item"
353            ],
354            "accession": "IGVFSM8651WJRG",
355            "donors": [
356                {
357                    "@id": "/human-donors/IGVFDO1756PPKO/",
358                    "accession": "IGVFDO1756PPKO",
359                    "status": "released"
360                }
361            ],
362            "sample_terms": [
363                {
364                    "@id": "/sample-terms/EFO_0009747/",
365                    "status": "released",
366                    "term_name": "GM25256 (WTC-11)"
367                }
368            ],
369            "status": "released",
370            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 8 days"
371        },
372        {
373            "@id": "/in-vitro-systems/IGVFSM0061CGCM/",
374            "@type": [
375                "InVitroSystem",
376                "Biosample",
377                "Sample",
378                "Item"
379            ],
380            "accession": "IGVFSM0061CGCM",
381            "donors": [
382                {
383                    "@id": "/human-donors/IGVFDO1756PPKO/",
384                    "accession": "IGVFDO1756PPKO",
385                    "status": "released"
386                }
387            ],
388            "sample_terms": [
389                {
390                    "@id": "/sample-terms/EFO_0009747/",
391                    "status": "released",
392                    "term_name": "GM25256 (WTC-11)"
393                }
394            ],
395            "status": "released",
396            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days"
397        },
398        {
399            "@id": "/in-vitro-systems/IGVFSM0703TJTR/",
400            "@type": [
401                "InVitroSystem",
402                "Biosample",
403                "Sample",
404                "Item"
405            ],
406            "accession": "IGVFSM0703TJTR",
407            "donors": [
408                {
409                    "@id": "/human-donors/IGVFDO1756PPKO/",
410                    "accession": "IGVFDO1756PPKO",
411                    "status": "released"
412                }
413            ],
414            "sample_terms": [
415                {
416                    "@id": "/sample-terms/EFO_0009747/",
417                    "status": "released",
418                    "term_name": "GM25256 (WTC-11)"
419                }
420            ],
421            "status": "released",
422            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days"
423        },
424        {
425            "@id": "/in-vitro-systems/IGVFSM8705HTOD/",
426            "@type": [
427                "InVitroSystem",
428                "Biosample",
429                "Sample",
430                "Item"
431            ],
432            "accession": "IGVFSM8705HTOD",
433            "donors": [
434                {
435                    "@id": "/human-donors/IGVFDO1756PPKO/",
436                    "accession": "IGVFDO1756PPKO",
437                    "status": "released"
438                }
439            ],
440            "sample_terms": [
441                {
442                    "@id": "/sample-terms/EFO_0009747/",
443                    "status": "released",
444                    "term_name": "GM25256 (WTC-11)"
445                }
446            ],
447            "status": "released",
448            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days"
449        },
450        {
451            "@id": "/in-vitro-systems/IGVFSM0024HDNQ/",
452            "@type": [
453                "InVitroSystem",
454                "Biosample",
455                "Sample",
456                "Item"
457            ],
458            "accession": "IGVFSM0024HDNQ",
459            "donors": [
460                {
461                    "@id": "/human-donors/IGVFDO1756PPKO/",
462                    "accession": "IGVFDO1756PPKO",
463                    "status": "released"
464                }
465            ],
466            "sample_terms": [
467                {
468                    "@id": "/sample-terms/EFO_0009747/",
469                    "status": "released",
470                    "term_name": "GM25256 (WTC-11)"
471                }
472            ],
473            "status": "released",
474            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days"
475        },
476        {
477            "@id": "/in-vitro-systems/IGVFSM6112TPWG/",
478            "@type": [
479                "InVitroSystem",
480                "Biosample",
481                "Sample",
482                "Item"
483            ],
484            "accession": "IGVFSM6112TPWG",
485            "donors": [
486                {
487                    "@id": "/human-donors/IGVFDO1756PPKO/",
488                    "accession": "IGVFDO1756PPKO",
489                    "status": "released"
490                }
491            ],
492            "sample_terms": [
493                {
494                    "@id": "/sample-terms/EFO_0009747/",
495                    "status": "released",
496                    "term_name": "GM25256 (WTC-11)"
497                }
498            ],
499            "status": "released",
500            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days"
501        },
502        {
503            "@id": "/in-vitro-systems/IGVFSM0098GQKH/",
504            "@type": [
505                "InVitroSystem",
506                "Biosample",
507                "Sample",
508                "Item"
509            ],
510            "accession": "IGVFSM0098GQKH",
511            "donors": [
512                {
513                    "@id": "/human-donors/IGVFDO1756PPKO/",
514                    "accession": "IGVFDO1756PPKO",
515                    "status": "released"
516                }
517            ],
518            "sample_terms": [
519                {
520                    "@id": "/sample-terms/EFO_0009747/",
521                    "status": "released",
522                    "term_name": "GM25256 (WTC-11)"
523                }
524            ],
525            "status": "released",
526            "summary": "Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days"
527        }
528    ],
529    "multiplexing_methods": [
530        "barcode based"
531    ],
532    "origin_of": [],
533    "protocols": [
534        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
535    ],
536    "release_timestamp": "2025-03-07T01:14:58.127295+00:00",
537    "sample_terms": [
538        {
539            "@id": "/sample-terms/EFO_0009747/",
540            "status": "released",
541            "term_name": "GM25256 (WTC-11)"
542        }
543    ],
544    "schema_version": "10",
545    "sorted_fractions": [],
546    "sources": [
547        {
548            "@id": "/labs/charles-gersbach/",
549            "status": "current",
550            "title": "Charles Gersbach, Duke"
551        }
552    ],
553    "status": "released",
554    "submitted_by": {
555        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
556        "title": "Christopher Mcginnis"
557    },
558    "summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples",
559    "taxa": "Homo sapiens",
560    "treatments": [],
561    "uuid": "0d1a54b4-7bf2-4593-a852-1908364d2ae5",
562    "virtual": false
563}