{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM1370NRUL/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1370NRUL",
"aliases": [
"igvf:corces_multiplexedSample_X019_G8"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"biomarkers": [],
"classifications": [
"tissue",
"multiplexed sample"
],
"creation_timestamp": "2025-03-19T17:56:16.574459+00:00",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1052TZWO/",
"accession": "IGVFDO1052TZWO",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1464XWYC/",
"accession": "IGVFDO1464XWYC",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2045AFUW/",
"accession": "IGVFDO2045AFUW",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2207KFPL/",
"accession": "IGVFDO2207KFPL",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO4812DEVH/",
"accession": "IGVFDO4812DEVH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5214IKNF/",
"accession": "IGVFDO5214IKNF",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7315DYIP/",
"accession": "IGVFDO7315DYIP",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7678VYKP/",
"accession": "IGVFDO7678VYKP",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8046LKFZ/",
"accession": "IGVFDO8046LKFZ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9236YUAT/",
"accession": "IGVFDO9236YUAT",
"ethnicities": [
"European"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1812PDJF/",
"accession": "IGVFDS1812PDJF",
"aliases": [
"igvf:corces_measurementSet_X019_G8_ATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS2043CBXG/",
"accession": "IGVFDS2043CBXG",
"aliases": [
"igvf:corces_measurementSet_X019_G8_RNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/tissues/IGVFSM3160QNXJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3160QNXJ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2207KFPL/",
"accession": "IGVFDO2207KFPL",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 72 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM2563BBPK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2563BBPK",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO3471KCPD/",
"accession": "IGVFDO3471KCPD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM2612FWGJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2612FWGJ",
"donors": [
{
"@id": "/human-donors/IGVFDO5205IAEO/",
"accession": "IGVFDO5205IAEO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 79 years) posterior cingulate gyrus tissue"
},
{
"@id": "/tissues/IGVFSM1537ESYC/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1537ESYC",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO4812DEVH/",
"accession": "IGVFDO4812DEVH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 76 years) posterior cingulate gyrus tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM7147DNSY/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7147DNSY",
"donors": [
{
"@id": "/human-donors/IGVFDO9236YUAT/",
"accession": "IGVFDO9236YUAT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 86 years) middle temporal gyrus tissue"
},
{
"@id": "/tissues/IGVFSM4493BFFK/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4493BFFK",
"donors": [
{
"@id": "/human-donors/IGVFDO5214IKNF/",
"accession": "IGVFDO5214IKNF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 74 years) middle temporal gyrus tissue"
},
{
"@id": "/tissues/IGVFSM5392ACSB/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5392ACSB",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7678VYKP/",
"accession": "IGVFDO7678VYKP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 73 years) middle temporal gyrus tissue associated with Parkinson's disease, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM6983XFQW/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6983XFQW",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO7315DYIP/",
"accession": "IGVFDO7315DYIP",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM0739SKGE/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0739SKGE",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO8046LKFZ/",
"accession": "IGVFDO8046LKFZ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 69 years) cerebellar cortex tissue associated with Parkinson's disease"
},
{
"@id": "/tissues/IGVFSM0148BRBA/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0148BRBA",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO2045AFUW/",
"accession": "IGVFDO2045AFUW",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment"
},
{
"@id": "/tissues/IGVFSM8629MULH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8629MULH",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1464XWYC/",
"accession": "IGVFDO1464XWYC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
},
{
"@id": "/tissues/IGVFSM0203GIXJ/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0203GIXJ",
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"donors": [
{
"@id": "/human-donors/IGVFDO1052TZWO/",
"accession": "IGVFDO1052TZWO",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy"
}
],
"multiplexing_methods": [
"genetic"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"status": "preview",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"status": "preview",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002129/",
"status": "preview",
"term_name": "cerebellar cortex"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"status": "preview",
"term_name": "posterior cingulate gyrus"
},
{
"@id": "/sample-terms/UBERON_0002771/",
"status": "preview",
"term_name": "middle temporal gyrus"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/sources/banner-health/",
"status": "released",
"title": "Banner Health"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"summary": "multiplexed sample: Homo sapiens (male, 78 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 87 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "98757fc4-f6bc-4420-9802-9786453ade82",
"virtual": false
}