{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM1205PSUM/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM1205PSUM",
"aliases": [
"jimmie-ye:XX15-SC1"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview multiplexed sample [IGVFSM1205PSUM](/multiplexed-samples/IGVFSM1205PSUM/) has in progress subobject tabular file [IGVFFI3982TDXF](/tabular-files/IGVFFI3982TDXF/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM1205PSUM/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI3982TDXF/",
"biomarkers": [],
"classifications": [
"primary cell",
"multiplexed sample"
],
"creation_timestamp": "2025-03-07T23:18:58.668966+00:00",
"description": "Multiplexed PBMC nuclei",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0082JSOB/",
"accession": "IGVFDO0082JSOB",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO0287RIWJ/",
"accession": "IGVFDO0287RIWJ",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO1881RNKM/",
"accession": "IGVFDO1881RNKM",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO2696HGER/",
"accession": "IGVFDO2696HGER",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO5328MCOF/",
"accession": "IGVFDO5328MCOF",
"ethnicities": [
"African American"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6057RTOI/",
"accession": "IGVFDO6057RTOI",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6225VCFJ/",
"accession": "IGVFDO6225VCFJ",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6487UZPC/",
"accession": "IGVFDO6487UZPC",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO6494ETQD/",
"accession": "IGVFDO6494ETQD",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7109MRSV/",
"accession": "IGVFDO7109MRSV",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7264PRBG/",
"accession": "IGVFDO7264PRBG",
"ethnicities": [
"European"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7463BCHH/",
"accession": "IGVFDO7463BCHH",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7490MDYK/",
"accession": "IGVFDO7490MDYK",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO7916YRKT/",
"accession": "IGVFDO7916YRKT",
"ethnicities": [
"Asian"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO8167OHGI/",
"accession": "IGVFDO8167OHGI",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9746GLBM/",
"accession": "IGVFDO9746GLBM",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
},
{
"@id": "/human-donors/IGVFDO9941UDYG/",
"accession": "IGVFDO9941UDYG",
"ethnicities": [
"Indigenous in North America"
],
"status": "preview"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS1649BWGA/",
"accession": "IGVFDS1649BWGA",
"aliases": [
"jimmie-ye:XX15-SC1_snATAC"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus ATAC-seq (10x multiome)"
},
{
"@id": "/measurement-sets/IGVFDS7186NAJU/",
"accession": "IGVFDS7186NAJU",
"aliases": [
"jimmie-ye:XX15-SC1_snRNA"
],
"file_set_type": "experimental data",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"preferred_assay_title": "10x multiome",
"status": "preview",
"summary": "single-nucleus RNA sequencing assay (10x multiome)"
},
{
"@id": "/analysis-sets/IGVFDS4518FVAG/",
"accession": "IGVFDS4518FVAG",
"aliases": [
"jimmie-ye:XX15-SC1-analysis-set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Jimmie Ye, UCSF"
},
"status": "in progress",
"summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome): fragments, index"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"data_use_limitation_summary": "GRU",
"status": "in progress"
}
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/primary-cells/IGVFSM1625GXJR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1625GXJR",
"donors": [
{
"@id": "/human-donors/IGVFDO2392CNUG/",
"accession": "IGVFDO2392CNUG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0051WZAH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0051WZAH",
"donors": [
{
"@id": "/human-donors/IGVFDO0082JSOB/",
"accession": "IGVFDO0082JSOB",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7795CGAD/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7795CGAD",
"donors": [
{
"@id": "/human-donors/IGVFDO2417TCIH/",
"accession": "IGVFDO2417TCIH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 37.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9031MNQU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9031MNQU",
"donors": [
{
"@id": "/human-donors/IGVFDO6487UZPC/",
"accession": "IGVFDO6487UZPC",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7198HOTR/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7198HOTR",
"donors": [
{
"@id": "/human-donors/IGVFDO7463BCHH/",
"accession": "IGVFDO7463BCHH",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7373NGVQ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7373NGVQ",
"donors": [
{
"@id": "/human-donors/IGVFDO1881RNKM/",
"accession": "IGVFDO1881RNKM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7692YFGX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7692YFGX",
"donors": [
{
"@id": "/human-donors/IGVFDO7490MDYK/",
"accession": "IGVFDO7490MDYK",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 21.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9751OPFH/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9751OPFH",
"donors": [
{
"@id": "/human-donors/IGVFDO8167OHGI/",
"accession": "IGVFDO8167OHGI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 34.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM0804MIBY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0804MIBY",
"donors": [
{
"@id": "/human-donors/IGVFDO5328MCOF/",
"accession": "IGVFDO5328MCOF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6050DLMZ/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6050DLMZ",
"donors": [
{
"@id": "/human-donors/IGVFDO9746GLBM/",
"accession": "IGVFDO9746GLBM",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 31.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1613DBCX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1613DBCX",
"donors": [
{
"@id": "/human-donors/IGVFDO0287RIWJ/",
"accession": "IGVFDO0287RIWJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7347UJXV/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7347UJXV",
"donors": [
{
"@id": "/human-donors/IGVFDO9941UDYG/",
"accession": "IGVFDO9941UDYG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 51.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM5913AZMY/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5913AZMY",
"donors": [
{
"@id": "/human-donors/IGVFDO6057RTOI/",
"accession": "IGVFDO6057RTOI",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM9497ISYX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9497ISYX",
"donors": [
{
"@id": "/human-donors/IGVFDO1496BYOF/",
"accession": "IGVFDO1496BYOF",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 38.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM6824DHLW/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6824DHLW",
"donors": [
{
"@id": "/human-donors/IGVFDO6225VCFJ/",
"accession": "IGVFDO6225VCFJ",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 23.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4922BCRE/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4922BCRE",
"donors": [
{
"@id": "/human-donors/IGVFDO7916YRKT/",
"accession": "IGVFDO7916YRKT",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 26.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM7887JJQM/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7887JJQM",
"donors": [
{
"@id": "/human-donors/IGVFDO7264PRBG/",
"accession": "IGVFDO7264PRBG",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (female, 43.26821 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM1703YIEX/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1703YIEX",
"donors": [
{
"@id": "/human-donors/IGVFDO2696HGER/",
"accession": "IGVFDO2696HGER",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 25.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM2177WHXU/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2177WHXU",
"donors": [
{
"@id": "/human-donors/IGVFDO7109MRSV/",
"accession": "IGVFDO7109MRSV",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 28.0 years) peripheral blood mononuclear cell"
},
{
"@id": "/primary-cells/IGVFSM4857NPYO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4857NPYO",
"donors": [
{
"@id": "/human-donors/IGVFDO6494ETQD/",
"accession": "IGVFDO6494ETQD",
"status": "preview"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "Homo sapiens (male, 34.0 years) peripheral blood mononuclear cell"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"status": "released",
"term_name": "peripheral blood mononuclear cell"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/jimmie-ye/",
"status": "current",
"title": "Jimmie Ye, UCSF"
}
],
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"summary": "multiplexed sample: Homo sapiens (female, 27.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": [],
"uuid": "fd195747-ee2e-44a9-8de5-bc4b1d1f0057",
"virtual": false
}