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substantia nigra — IGVFSM0937HBMF

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This object is in preview status. Metadata is subject to change until this object is released.
Summary
multiplexed sample: Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Multiplexing Method
genetic
Sources
Taxa
Homo sapiens
Aliases
igvf:corces_multiplexedSample_X038_G4

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1805
male
Homo sapiens
  • igvf:corces_donor_BANN1973
male
Homo sapiens
  • igvf:corces_donor_BANN1506
male
Homo sapiens
  • igvf:corces_donor_BANN0950
male
Homo sapiens
  • igvf:corces_donor_BANN0002
male
Homo sapiens
  • igvf:corces_donor_BANN1747
male
Homo sapiens
  • igvf:corces_donor_BANN1839
female
Homo sapiens
  • igvf:corces_donor_BANN9926
female
Homo sapiens
  • igvf:corces_donor_BANN1329
male
Homo sapiens
  • igvf:corces_donor_BANN1504
female
Homo sapiens

File Sets

2 items
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X038_G4_ATAC
Ryan Corces, Gladstone Institute UCSF
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X038_G4_RNA
Ryan Corces, Gladstone Institute UCSF

Multiplexed Samples

12 items
Sample Terms
Disease Terms
Summary
Tissue
Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease
Tissue
Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment
Tissue
Homo sapiens (male, 90 or above years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy
Tissue
Homo sapiens (male, 75 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy
Tissue
Homo sapiens (female, 72 years) middle temporal gyrus tissue associated with Parkinson's disease
Tissue
Homo sapiens (female, 79 years) posterior cingulate gyrus tissue associated with Parkinson's disease
Tissue
Homo sapiens (female, 52 years) substantia nigra tissue
Tissue
Homo sapiens (male, 84 years) cerebellar cortex tissue associated with Parkinson's disease
Tissue
Homo sapiens (male, 90 or above years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy
Tissue
Homo sapiens (male, 79 years) posterior cingulate gyrus tissue associated with Alzheimer disease, Parkinson's disease

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF