B cell — IGVFSM0805QYBD

1{
2    "@context": "/terms/",
3    "@id": "/multiplexed-samples/IGVFSM0805QYBD/",
4    "@type": [
5        "MultiplexedSample",
6        "Sample",
7        "Item"
8    ],
9    "accession": "IGVFSM0805QYBD",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20231117"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012041/",
16        "component": "networks"
17    },
18    "barcode_map": "/tabular-files/IGVFFI0374AJKH/",
19    "biomarkers": [],
20    "classifications": [
21        "differentiated cell specimen",
22        "multiplexed sample"
23    ],
24    "creation_timestamp": "2025-01-14T16:12:22.954649+00:00",
25    "description": "2023-11-17 multiplexed sample: day 4 and day 6 perturbed cells",
26    "disease_terms": [],
27    "donors": [
28        {
29            "@id": "/human-donors/IGVFDO9916UELD/",
30            "accession": "IGVFDO9916UELD",
31            "ethnicities": [
32                "African American"
33            ],
34            "status": "preview"
35        }
36    ],
37    "file_sets": [
38        {
39            "@id": "/measurement-sets/IGVFDS7476HGYD/",
40            "accession": "IGVFDS7476HGYD",
41            "aliases": [
42                "harinder-singh:multiplexed_perturbation_scRNAseq_20231117_measurement"
43            ],
44            "file_set_type": "experimental data",
45            "lab": {
46                "title": "Harinder Singh, University of Pittsburgh"
47            },
48            "preferred_assay_title": "scRNA-seq",
49            "status": "preview",
50            "summary": "scRNA-seq"
51        },
52        {
53            "@id": "/analysis-sets/IGVFDS2622TJIT/",
54            "accession": "IGVFDS2622TJIT",
55            "aliases": [
56                "harinder-singh:AnalysisSet_measurement-IGVFDS7476HGYD_sc-uniform-pipeline"
57            ],
58            "file_set_type": "intermediate analysis",
59            "lab": {
60                "title": "Harinder Singh, University of Pittsburgh"
61            },
62            "status": "in progress",
63            "summary": "scRNA-seq"
64        },
65        {
66            "@id": "/analysis-sets/IGVFDS2276YYKF/",
67            "accession": "IGVFDS2276YYKF",
68            "aliases": [
69                "harinder-singh:multiplexed_perturbation_scRNAseq_20231117_cellranger_analysis_set"
70            ],
71            "file_set_type": "intermediate analysis",
72            "lab": {
73                "title": "Harinder Singh, University of Pittsburgh"
74            },
75            "status": "preview",
76            "summary": "scRNA-seq: sparse gene count matrix"
77        },
78        {
79            "@id": "/analysis-sets/IGVFDS2177GGWA/",
80            "accession": "IGVFDS2177GGWA",
81            "aliases": [
82                "harinder-singh:multiplexed_perturbation_scRNAseq_20231117_mira_analysis_set"
83            ],
84            "file_set_type": "principal analysis",
85            "lab": {
86                "title": "Harinder Singh, University of Pittsburgh"
87            },
88            "status": "preview",
89            "summary": "scRNA-seq: sparse gene count matrix"
90        }
91    ],
92    "institutional_certificates": [
93        {
94            "@id": "/institutional-certificates/4786e123-f40d-4b08-aa06-b5f35e9cc453/",
95            "certificate_identifier": "IP108-01",
96            "controlled_access": true,
97            "data_use_limitation": "HMB",
98            "data_use_limitation_summary": "HMB",
99            "status": "in progress"
100        }
101    ],
102    "lab": {
103        "@id": "/labs/harinder-singh/",
104        "title": "Harinder Singh, University of Pittsburgh"
105    },
106    "modifications": [],
107    "multiplexed_in": [],
108    "multiplexed_samples": [
109        {
110            "@id": "/in-vitro-systems/IGVFSM7878KXRL/",
111            "@type": [
112                "InVitroSystem",
113                "Biosample",
114                "Sample",
115                "Item"
116            ],
117            "accession": "IGVFSM7878KXRL",
118            "donors": [
119                {
120                    "@id": "/human-donors/IGVFDO9916UELD/",
121                    "accession": "IGVFDO9916UELD",
122                    "status": "preview"
123                }
124            ],
125            "sample_terms": [
126                {
127                    "@id": "/sample-terms/CL_0000236/",
128                    "status": "released",
129                    "term_name": "B cell"
130                }
131            ],
132            "status": "preview",
133            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
134        },
135        {
136            "@id": "/in-vitro-systems/IGVFSM1736HNLV/",
137            "@type": [
138                "InVitroSystem",
139                "Biosample",
140                "Sample",
141                "Item"
142            ],
143            "accession": "IGVFSM1736HNLV",
144            "donors": [
145                {
146                    "@id": "/human-donors/IGVFDO9916UELD/",
147                    "accession": "IGVFDO9916UELD",
148                    "status": "preview"
149                }
150            ],
151            "sample_terms": [
152                {
153                    "@id": "/sample-terms/CL_0000236/",
154                    "status": "released",
155                    "term_name": "B cell"
156                }
157            ],
158            "status": "preview",
159            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
160        },
161        {
162            "@id": "/in-vitro-systems/IGVFSM4534NJFI/",
163            "@type": [
164                "InVitroSystem",
165                "Biosample",
166                "Sample",
167                "Item"
168            ],
169            "accession": "IGVFSM4534NJFI",
170            "donors": [
171                {
172                    "@id": "/human-donors/IGVFDO9916UELD/",
173                    "accession": "IGVFDO9916UELD",
174                    "status": "preview"
175                }
176            ],
177            "sample_terms": [
178                {
179                    "@id": "/sample-terms/CL_0000236/",
180                    "status": "released",
181                    "term_name": "B cell"
182                }
183            ],
184            "status": "preview",
185            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
186        },
187        {
188            "@id": "/in-vitro-systems/IGVFSM2991WIRE/",
189            "@type": [
190                "InVitroSystem",
191                "Biosample",
192                "Sample",
193                "Item"
194            ],
195            "accession": "IGVFSM2991WIRE",
196            "donors": [
197                {
198                    "@id": "/human-donors/IGVFDO9916UELD/",
199                    "accession": "IGVFDO9916UELD",
200                    "status": "preview"
201                }
202            ],
203            "sample_terms": [
204                {
205                    "@id": "/sample-terms/CL_0000236/",
206                    "status": "released",
207                    "term_name": "B cell"
208                }
209            ],
210            "status": "preview",
211            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
212        },
213        {
214            "@id": "/in-vitro-systems/IGVFSM0420VXFO/",
215            "@type": [
216                "InVitroSystem",
217                "Biosample",
218                "Sample",
219                "Item"
220            ],
221            "accession": "IGVFSM0420VXFO",
222            "donors": [
223                {
224                    "@id": "/human-donors/IGVFDO9916UELD/",
225                    "accession": "IGVFDO9916UELD",
226                    "status": "preview"
227                }
228            ],
229            "sample_terms": [
230                {
231                    "@id": "/sample-terms/CL_0000236/",
232                    "status": "released",
233                    "term_name": "B cell"
234                }
235            ],
236            "status": "preview",
237            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
238        },
239        {
240            "@id": "/in-vitro-systems/IGVFSM1596RYQF/",
241            "@type": [
242                "InVitroSystem",
243                "Biosample",
244                "Sample",
245                "Item"
246            ],
247            "accession": "IGVFSM1596RYQF",
248            "donors": [
249                {
250                    "@id": "/human-donors/IGVFDO9916UELD/",
251                    "accession": "IGVFDO9916UELD",
252                    "status": "preview"
253                }
254            ],
255            "sample_terms": [
256                {
257                    "@id": "/sample-terms/CL_0000236/",
258                    "status": "released",
259                    "term_name": "B cell"
260                }
261            ],
262            "status": "preview",
263            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days"
264        },
265        {
266            "@id": "/in-vitro-systems/IGVFSM3611DZBR/",
267            "@type": [
268                "InVitroSystem",
269                "Biosample",
270                "Sample",
271                "Item"
272            ],
273            "accession": "IGVFSM3611DZBR",
274            "donors": [
275                {
276                    "@id": "/human-donors/IGVFDO9916UELD/",
277                    "accession": "IGVFDO9916UELD",
278                    "status": "preview"
279                }
280            ],
281            "sample_terms": [
282                {
283                    "@id": "/sample-terms/CL_0000236/",
284                    "status": "released",
285                    "term_name": "B cell"
286                }
287            ],
288            "status": "preview",
289            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
290        },
291        {
292            "@id": "/in-vitro-systems/IGVFSM6638UIIZ/",
293            "@type": [
294                "InVitroSystem",
295                "Biosample",
296                "Sample",
297                "Item"
298            ],
299            "accession": "IGVFSM6638UIIZ",
300            "donors": [
301                {
302                    "@id": "/human-donors/IGVFDO9916UELD/",
303                    "accession": "IGVFDO9916UELD",
304                    "status": "preview"
305                }
306            ],
307            "sample_terms": [
308                {
309                    "@id": "/sample-terms/CL_0000236/",
310                    "status": "released",
311                    "term_name": "B cell"
312                }
313            ],
314            "status": "preview",
315            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
316        },
317        {
318            "@id": "/in-vitro-systems/IGVFSM8490JURK/",
319            "@type": [
320                "InVitroSystem",
321                "Biosample",
322                "Sample",
323                "Item"
324            ],
325            "accession": "IGVFSM8490JURK",
326            "donors": [
327                {
328                    "@id": "/human-donors/IGVFDO9916UELD/",
329                    "accession": "IGVFDO9916UELD",
330                    "status": "preview"
331                }
332            ],
333            "sample_terms": [
334                {
335                    "@id": "/sample-terms/CL_0000236/",
336                    "status": "released",
337                    "term_name": "B cell"
338                }
339            ],
340            "status": "preview",
341            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
342        },
343        {
344            "@id": "/in-vitro-systems/IGVFSM8916OXSR/",
345            "@type": [
346                "InVitroSystem",
347                "Biosample",
348                "Sample",
349                "Item"
350            ],
351            "accession": "IGVFSM8916OXSR",
352            "donors": [
353                {
354                    "@id": "/human-donors/IGVFDO9916UELD/",
355                    "accession": "IGVFDO9916UELD",
356                    "status": "preview"
357                }
358            ],
359            "sample_terms": [
360                {
361                    "@id": "/sample-terms/CL_0000236/",
362                    "status": "released",
363                    "term_name": "B cell"
364                }
365            ],
366            "status": "preview",
367            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
368        },
369        {
370            "@id": "/in-vitro-systems/IGVFSM6111NPLV/",
371            "@type": [
372                "InVitroSystem",
373                "Biosample",
374                "Sample",
375                "Item"
376            ],
377            "accession": "IGVFSM6111NPLV",
378            "donors": [
379                {
380                    "@id": "/human-donors/IGVFDO9916UELD/",
381                    "accession": "IGVFDO9916UELD",
382                    "status": "preview"
383                }
384            ],
385            "sample_terms": [
386                {
387                    "@id": "/sample-terms/CL_0000236/",
388                    "status": "released",
389                    "term_name": "B cell"
390                }
391            ],
392            "status": "preview",
393            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
394        },
395        {
396            "@id": "/in-vitro-systems/IGVFSM5914OPSR/",
397            "@type": [
398                "InVitroSystem",
399                "Biosample",
400                "Sample",
401                "Item"
402            ],
403            "accession": "IGVFSM5914OPSR",
404            "donors": [
405                {
406                    "@id": "/human-donors/IGVFDO9916UELD/",
407                    "accession": "IGVFDO9916UELD",
408                    "status": "preview"
409                }
410            ],
411            "sample_terms": [
412                {
413                    "@id": "/sample-terms/CL_0000236/",
414                    "status": "released",
415                    "term_name": "B cell"
416                }
417            ],
418            "status": "preview",
419            "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days"
420        }
421    ],
422    "multiplexing_methods": [
423        "barcode based"
424    ],
425    "origin_of": [],
426    "sample_terms": [
427        {
428            "@id": "/sample-terms/CL_0000236/",
429            "status": "released",
430            "term_name": "B cell"
431        }
432    ],
433    "schema_version": "10",
434    "sorted_fractions": [],
435    "sources": [
436        {
437            "@id": "/sources/stem-cell-technologies/",
438            "status": "released",
439            "title": "STEMCELL Technologies"
440        }
441    ],
442    "status": "preview",
443    "submitted_by": {
444        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
445        "title": "Nicholas Pease"
446    },
447    "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; ... and 10 more samples",
448    "taxa": "Homo sapiens",
449    "treatments": [],
450    "uuid": "e7743617-6393-456f-a2af-d74c4d94fc43",
451    "virtual": false
452}