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IGVFFI8092YGSW

released
validated
File Set
IGVFDS2500WRRQ(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/9c457b9f-fc6d-4cf1-b249-218827e9b449/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:IGVFDS2500WRRQ_matrix_file
md5sum
e79105a06cb6f1bdeb4bb23b60bcf299
File Size
1.2 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/053cebc3-3088-4281-87d1-65fca1fcb4ea/call-rna/wf_rna/d1a40407-23d0-447c-805b-7a9c987f8505/call-kb/SS-PKR-434.h5ad
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of matrix h5 generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 433)

Reference Files

2 items
tar
transcriptome index
GRCm39 GENCODE M36 transcriptome index
External Lab, Community
1.7 GB
validated
tar
genome index
GRCm39 genome index
External Lab, Community
5.3 GB
validated

Files This File Derives From

9 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
15 GB
validated
fastq
reads
Jason Buenrostro, Broad
15 GB
validated
fastq
reads
Jason Buenrostro, Broad
20 GB
validated
fastq
reads
Jason Buenrostro, Broad
12 GB
validated
fastq
reads
Jason Buenrostro, Broad
9.0 GB
validated
fastq
reads
Jason Buenrostro, Broad
9.0 GB
validated