IGVFFI9807HGMW

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/index-files/IGVFFI9807HGMW/",
4    "@type": [
5        "IndexFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9807HGMW",
10    "aliases": [
11        "tim-reddy:starr-seq-rna-bam-bai-k562-P017"
12    ],
13    "analysis_step_version": "/analysis-step-versions/cfaab400-714a-45b5-9800-3ff6f9c929c2/",
14    "assay_titles": [
15        "SUPERSTARR"
16    ],
17    "assembly": "GRCh38",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG012053/",
21        "component": "functional characterization"
22    },
23    "checkfiles_version": "v14",
24    "content_type": "index",
25    "creation_timestamp": "2025-02-06T15:45:26.791781+00:00",
26    "derived_from": [
27        "/alignment-files/IGVFFI6210SKPU/"
28    ],
29    "file_format": "bai",
30    "file_set": {
31        "@id": "/analysis-sets/IGVFDS5241INPJ/",
32        "@type": [
33            "AnalysisSet",
34            "FileSet",
35            "Item"
36        ],
37        "accession": "IGVFDS5241INPJ",
38        "file_set_type": "principal analysis",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM8999FKIW/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM8999FKIW",
49                "classifications": [
50                    "cell line"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/EFO_0002067/",
55                        "status": "released",
56                        "term_name": "K562"
57                    }
58                ],
59                "status": "released",
60                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
61                "taxa": "Homo sapiens"
62            }
63        ],
64        "status": "released",
65        "summary": "SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants"
66    },
67    "file_size": 2559160,
68    "filtered": false,
69    "gene_list_for": [],
70    "href": "/index-files/IGVFFI9807HGMW/@@download/IGVFFI9807HGMW.bai",
71    "input_file_for": [],
72    "integrated_in": [],
73    "lab": {
74        "@id": "/labs/tim-reddy/",
75        "title": "Tim Reddy, Duke"
76    },
77    "loci_list_for": [],
78    "md5sum": "7ccf8c65bb638867300800e1284d3eac",
79    "quality_metrics": [],
80    "redacted": false,
81    "release_timestamp": "2025-04-09T16:39:57.302651+00:00",
82    "s3_uri": "s3://igvf-files/2025/02/06/f78ce4e4-360b-4e16-b8c6-b20554da2a29/IGVFFI9807HGMW.bai",
83    "schema_version": "1",
84    "status": "released",
85    "submitted_by": {
86        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
87        "title": "Alejandro Barrera"
88    },
89    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.rna.pool17.f3q10.sorted.with_umis.dups_marked.bam.bai",
90    "summary": "index of IGVFFI6210SKPU",
91    "upload_status": "validated",
92    "uuid": "f78ce4e4-360b-4e16-b8c6-b20554da2a29",
93    "workflow": {
94        "@id": "/workflows/IGVFWF6957ZNII/",
95        "name": "SUPERSTARR Pipeline",
96        "uniform_pipeline": false
97    }
98}